Gossypium hirsutum

Overview
Species Name hirsutum
Family Malvaceae
Scientific Name Gossypium hirsutum L.
Synonym Gossypium tridens
Common Name algodonero Americano [Spanish] [view all 15]
Geographic Origin Southern Mexico
Genome (AD)1
Haploid Chromosome Number 26
Fertile withGossypium tomentosum [view all 2]
Sterile withGossypium herbaceum [view all 15]
Incompatible withGossypium davidsonii [view all 3]
GermplasmN/A
Library[view all 142]
Sequence [view all 2366642 ]
Alias
Synonym
Gossypium hirsutum var. palmeri
Gossypium hirsutum var. punctatum
Gossypium jamaicense
Gossypium lanceolatum
Gossypium mexicanum
Gossypium morrillii
Gossypium punctatum
Gossypium purpurascens
Gossypium religiosum
Gossypium schottii
Gossypium taitense
Gossypium tridens


Common Name
American Tetraploid
American cotton
American upland cotton
Bourbon cotton
cotton
upland cotton
Mian Hua [Chinese]
Lu Di Mian [Chinese]
coton velu [French]
cotonnier américain [French]
amerikanische Baumwolle [German]
Uplandbaumwolle [German]
algodoeiro-americano [Portuguese]
algodn [Spanish]
algodonero Americano [Spanish]
Germplasm
NameType
010001GTBD
0213TBD
0216TBD
0217TBD
0218TBD
0221TBD
0222TBD
0223TBD
0224TBD
0229TBD
02306 Yangi-YulTBD
0231TBD
0237TBD
0241TBD
0244TBD
0245TBD
0248TBD
0252TBD
0256TBD
0259 SNTBD

Page of 546
Maps
Map Name Map Details
(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part
Map Type : Genetic
Population Type : 4WC
Genome Group : AD
7235 x TM-1, RIL (2007)
Software : MapMaker v3.0b
Map Type : Genetic
Population Type : RIL
Genome Group : AD
Deltapine-61 x Texas-701, F2 (2007)
Map Type : Genetic
Population Type : F2
Genome Group : AD
DES 119-5 x MD51ne, F2:3 (2002)
Map Type : Genetic
Population Type : F2.3
Genome Group : AD
HQ95-6 x MD51ne, F2:3 (2002)
Map Type : Genetic
Population Type : F2.3
Genome Group : AD
HS-46 x MARCABUCAG8US-1-88, F2:3 (1998)
Map Type : Genetic
Population Type : F2.3
Genome Group : AD
HS-46 x MARCABUCAG8US-1-88, RIL (2009)
Map Type : Genetic
Population Type : RIL
Genome Group : AD
MD-5678ne x Prema, F2:3 (2000)
Map Type : Genetic
Population Type : F2.3
Genome Group : AD
Yumian-1 x T586, F2:3 (2005)
Map Type : Genetic
Population Type : F2:3
Genome Group : AD
Yumian-1 x T586, F2:7 (2008)
Map Type : Genetic
Population Type : RIL
Genome Group : AD
Zhongmiansuo-12 x 8891, RIL (2007)
Map Type : Genetic
Population Type : RIL
Genome Group : AD
MCU-5 x Siokra 1-4, RIL (2015 SNP)
Map Type : Genetic
Genome Group : AD
Phytogen 72 x Stoneville 474, F2 (2015 SNP)
Map Type : Genetic
Population Type : F2
Genome Group : AD
KEGG Report
Libraries
The following libraries are associated with this organism.
Library NameType
Cotton BAC Librarygenomic
EZAPcDNA
Gossypium hirsutum cloned into Strata clone blunt end pSC-B- amp/kan vectorgenomic
Lambda gt11cDNA
LambdaGem 12 library of Glenn Galauunassigned
LambdaGem 12 of G.Galauunassigned
Cotton embryocDNA
Cotton drought tolerant genotype, leafcDNA
Cotton Boll Abscission Zone cDNA LibrarycDNA
Gossypium hirsutum 24 days postanthesis secondary-stage fiberscDNA
Six-day Cotton fibercDNA
Cotton fiber and embryo Lambda Zap Express LibrarycDNA
Gossypium hirsutum cotyledoncDNA
Gossypium hirsutum ovule first day the flower openscDNA
pARcDNA
pGHcDNA
Pst1-M fragmentcDNA
Pst1-P fragmentcDNA
pVNCcDNA
cotton leaf cDNA (differential display PCR)cDNA
Cotton fiber subtracted cDNA librarycDNA
Cotton ovules of 0DPAcDNA
Cotton fiber of 18DPAcDNA
Cotton Root and Hypocotyl tissues infected with Fusarium oxysporum f.sp. vasinfectum (Fov) Lambda ZIPLOX Library (CFUS)cDNA
Cotton Root and Hypocotyl Lambda ZIPLOX Library (CRH)cDNA
Cotton fiber DDRTcDNA
Wilt ResistancecDNA
A suppression subtractive hybridization cDNA library from bacterial-blight-resistant cottoncDNA
G.h.fbr-swcDNA
Cultured cotton cellscDNA
Cotton leaf tissuecDNA
cotton fibercDNA
PCR amplified cotton stem cDNAcDNA
Cotton somatic embryogenesis subtracted cDNA librarycDNA
cDNA from CotyledonscDNA
3 week old cold stressed seedlingcDNA
5 week old drought stressed seedlingcDNA
15-20 DAA bolls from drought stressed plantscDNA
15-20 DAA bolls from irrigated plantscDNA
8-10 DAA cotton bolls from drought stressed plantscDNA
8-10 DAA cotton bolls from irrigated plantscDNA
3 and 5 week old seedlingscDNA
Leaf cDNA 8,14 hrs post inoculation with Xanthomonas campestris pv. malvacearum 3631cDNA
Leaf cDNA 20,30 hrs post inoculation with Xanthomonas campestris pv. malvacearum 3631cDNA
Leaf cDNA 45, 60 hrs post inoculation with Xanthomonas campestris pv. malvacearum 3631cDNA
Gossypium hirsutum 5-25 dpa fiber librarycDNA
cotton fiber suppression subtractive hybridization LibrarycDNA
Cotton Lambda Zap Express LibrarycDNA
Gossypium hirsutum (AD)2 embryoid one month after subculturecDNA
Gossypium hirsutum embryoid one month after subculturecDNA
Gossypium hirsutum cv. TM-1 embryoid one month after subculturecDNA
Fiber and Ovule of Xu-142 Lambda Zap Express LibrarycDNA
GH_CHXcDNA
Genomic in lambda Charon 35genomic
Cotton anther cDNA(differential display PCR) annotation.cDNA
GH_ONcDNA
GH_OCFcDNA
GH_TMOcDNA
Gossypium hirsutum cv. TM-1 embryoid calluscDNA
A suppression subtractive hybridization cDNA library from developmental senescence cotyledonscDNA
GH_LSLcDNA
Young Fiber 1-3 days after anthesiscDNA
fiber-five days after anthesiscDNA
Fiber - 3 days after anthesiscDNA
Stem - 7 weeks after plantingcDNA
Stem - 3 weeks after plantingcDNA
Fiber - 1 day after anthesiscDNA
Ovules - day of anthesis from a fiberless mutantcDNA
Ovules - day of anthesiscDNA
Root (free) - 7-10 weeks after plantingcDNA
Root (mb) - 3 weeks after plantingcDNA
Root (free) - 3 weeks after plantingcDNA
Stem (mb) - 7-10 weeks after plantingcDNA
Stem - 3-5 weeks after plantingcDNA
Stem (mb) 3-5 weeks after plantingcDNA
Stem (norm) - 3-5 weeks after plantingcDNA
Gossypium hirsutum fiber cellcDNA
Cotton Normalized Library random primedcDNA
Cotton Normalized Library dT primedcDNA
GH_SFcDNA
Gossypium hirsutum cotton fibercDNA
Cotton fiber suppression subtractive hybridization cDNA librarycDNA
Gossypium hirsutum Fiber SSH cDNA LibrarycDNA
cotton leaves expressed sequencescDNA
Cotton fiber 0-10 day post anthesiscDNA
Cotton 1-14 day post anthesis Lambda Zap Express LibrarycDNA
Gossypium hirsutum D8 restoration anther cDNAcDNA
Subtracted cDNA library of cotton between cold acclimation and normal onescDNA
Cotton ovule and fiber 3-5 days post anthesiscDNA
Library for cotton induced by herbivorescDNA
suppression subtractive hybridization library of cell wall regeneration from protoplastcDNA
SSH library of differentially expressed genes response to medium changes during cotton somatic embryogenesiscDNA
SSH library of cotton somatic embryogenesiscDNA
Cotton resistant to Meloidogyne incognitacDNA
Cotton susceptible to Meloidogyne incognitacDNA
Gossypium hirsutum leaf blade of M1 progenycDNA
Differential display of COTTON GENOTYPE, leaf, one month of infectioncDNA
Gossypium hirsutum cv. Emian 22 at fiber initiation stage 5-20dpacDNA
Gossypium hirsutum cv. Emian 22 at fiber initiation stagecDNA
Cotton root NaCl treated suppression subtractive hybridization cDNA librarycDNA
cotton shoot apical meristems, buds and flowerscDNA
Differential display of Cotton Genotype, ovule (3 day post anthesis)cDNA
Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri NarmacDNA
Suppression subtractive hybridization library of cellular dedifferentiationcDNA
Brown cotton fiber 5-25 days post anthesis librarycDNA
Brown cotton seedlings in response to low temperature librarycDNA
Heat stress treated cotton (G.hirsutum L.) librarycDNA
Gossypium hirsutum differential display cDNA librarycDNA
Gossypium hirsutum RAPD markergenomic
Gossypium hirsutum DNAgenomic
Gossypium hirsutum L.genomic
CM Cotton SSR markersgenomic
Maxxagenomic
Palgenomic
BAC and BIBAC libraries from Upland cotton genetic standard TM-1genomic
Cotton methylation filtered library (Cotton_F)genomic
Cotton methylation unfiltered library (Cotton_U)genomic
Cotton methylation filtered library (LibID: 205)genomic
Cotton methylation filtered library (LibID: 124)genomic
Cotton methylation unfiltered library (LibID: 125)genomic
Gossypium hirsutum BAC librarygenomic
Plasmid, BAC and BIBAC libraries from upland cotton genetic standard TM-1genomic
GH_MBbgenomic
Gossypium hirsutum BAC ends (Wang K)genomic
Sau3I cotton microsatellite enriched librarygenomic
The original maize BAC library (ZMMBBb) is contaminated with Gossypium hirsutum cv Maxxa cotton.genomic
Uni-ZapcDNA
Upland cotton TM-1genomic
Differentially expressed transcript derived fragments (TDFs) upon water deficit stress in Gossypium hirsutum L.cDNA
Gossypium hirsutum BIBAC Librarygenomic
Lambda cottongenomic
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Transcripts

Below is a list of transcript assemblies that are available for Gossypium hirsutum. Click the assembly name for further details.

 
Assembly  Name Analysis Name Date Constructed Stats

 

Gossypium hirsutum CottonGen RefTrans V1

 

G. hirsutum CottonGen RefTrans V1

 

 

2016-10-25

Reads: 2.75 billion
Contigs:93,449

 

Gossypium hirsutum unigene V1.0

 

G. hirsutum unigene V1

 

2012-09-27

Reads: 442,954
Contigs:21,698
Singlets:128,218