JBrowse Links of Available Whole Genome Assemblies
Tetraploids:
2022-01: Gossypium hirsutum (AD1) 'B713' genome NSF_v1 ...coming soon
2022-01: Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1 ...coming soon
2022-01: Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1 ...coming soon
2020-04: Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
2020-04: Gossypium hirsutum (AD1) 'TM-1' genome WHU_updated v1
2019-08: Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
2019-08: Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
2019-03: Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
2018-10: Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
2017-09: Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release _v1.1
2015-04: Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1_a1.1
2015-04: Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1_a1
2022-01: Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1 ...coming soon ...
2019-11: Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
2019-03: Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
2016-04: Gossypium barbadense (AD2) '3-79' genome HAU_v1
2020-01: Gossypium tomentosum (AD3) genome HGS_v1.1
2019-09: Gossypium mustelinum (AD4) genome JGI_v1.1
2020-01: Gossypium darwinii (AD5) genome HGS_v1.1
Diploids:
2019-02: Gossypioides kirkii genome ISU_v3_a3
2020-04: Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
2021-08: Gossypium arboreum (A2) 'SXY1' genome HAU v1
2020-04: Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
2019-02: Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
2014-05: Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1
2021-08: Gossypium anomalum (B1) genome NSF_v1
2021-07: Gossypium thurberi (D1-5) genome CRI_v1
2019-04: Gossypium thurberi (D1-35) genome ISU_v1
2021-01: Gossypium armourianum (D2-1) genome ISU_v1
2021-02: Gossypium harknessii (D2-2) genome ISU_v1 - need to get correct link
2021-07: Gossypium davidsonii (D3d-8) genome CRI_v1
2021-02: Gossypium davidsonii (D3d-27) genome ISU_v1 ...coming soon
2021-02: Gossypium klotzschianum (D3k) genome ISU_v1 ...coming soon
2021-02: Gossypium aridum (D4) genome ISU_v1
2021-08: Gossypium raimondii (D5) 'Grai D502' genome HAU v1
2021-02: Gossypium raimondii (D5) 'D5-8' genome ISU_v1
2019-07: Gossypium raimondii (D5) 'D5-4' genome NSF_v1
2013-02: Gossypium raimondii (D5) genome JGI_v2_a2.1
2012-08: Gossypium raimondii (D5) genome BGI-CGP-draft_v1
2021-02: Gossypium gossypioides (D6) genome ISU_v1
2021-02: Gossypium lobatum (D7) genome ISU_v1
2021-02: Gossypium trilobum (D8) genome ISU_v1
2021-02: Gossypium laxum (D9) genome ISU_v1
2019-07: Gossypium turneri (D10) genome NSF_v1_a2
2021-02: Gossypium schwendimanii (D11) genome ISU_v1
2021-08: Gossypium stocksii (E1) genome NSF_v1
2020-01: Gossypium longicalyx (F1) genome NSF_v1
2019-10: Gossypium australe (G2) genome CRI_v1.1
2021-05: Gossypium rotundifolium (K12) 'Grot K201' genome HAU v1 - need to get correct link