Data Overview

 
 Community Projects (3)
 
 Contacts (623)
Number of contact by type
TypeNumber of contacts
company1
database14
institution13
lab2
organization2
person591
 
 Environment (457)
 
 Genes (873075)
SourceNumber of genesNumber of mRNA
Gossypium hirsutum (AD1) Genome HAU Assembly v1.0 & Annotation a1.0 / v1.1 a1.170200115836
NCBI Cotton Data548460
Gossypium hirsutum (AD1) genome ZJU-Improved Assembly v2.1 & Annotation a1.0072761
Gossypioides kirkii genome ISU Assembly v3.0 & Annotation v3.03668036680
Gossypium raimondii (D5) Draft Genome BGI-CGP v1.0 Assembly & Annotation040976
Gossypium hirsutum (AD1) Genome - Texas Interim release UTX-JGI v1.16657787800
Gossypium raimondii (D5) genome JGI assembly v2.0 (annot v2.1)3750577267
Gossypium barbadense (AD2) Genome HAU Assembly v2.0 & Annotation v1.071297109778
Gossypium hirsutum (AD1) TM1 genome CRI Assembly v1 & Annotation a17375079837
Gossypium mustelinum (AD4) genome JGI Assembly v1.174660106487
Gossypium turneri (D10) genome NSF Assembly v1 & Annotation a23969239692
Gossypium hirsutum (AD1) Genome NAU-NBI Assembly v1.1 & Annotation v1.17047870478
Gossypium arboreum (A2) genome CRI-Updated Assembly v1.0 & Annotation v1.08192040960
Gossypium barbadense (AD2) Genome HAU-SGI Assembly v1.0 & Annotation v1.080876109918
Gossypium raimondii (D5) genome NSF Assembly v1 & Annotation a14074341030
Gossypium hirsutum (AD1) Genome CGP-BGI Assembly v1.0 & Annotation v1.0076943
Gossypium arboreum (A2) Genome BGI Assembly v2.0 & Annotation v1.0040134
Gossypium barbadense (AD2) Hai7124 genome ZJU Assembly v1.1 & Annotation a1075071
Gossypium hirsutum (AD1) ZM24 genome CRI Assembly v1 & Annotation a17385199892
 
 Genomes (20)
 
 Genotypes
 
 SNP sets (5)
Project name
TAMU_SNP63K_genotyping
TN-RIL (F5:9) SNP genotyping
UCD_InDel_genotyping_2009
UCD_SNP_genotyping_2009
UCD_SNP_T3-RIL_genotyping_2009
 
 SSR set (1)
 
 NCGC SNTD 2015 - SSR
SpeciesNumber of markersNumber of genotypic of measurements
Gossypium hirsutum104204760
 
 Germplasm (17693)
Search Germplasm
Number of germpasm by types
Germplasm TypeNumber of germplasm
breeding_germplasm299
breeding_research_material1218
cultivar332
germplasm49
landrace26
population169
TBD: stock type to be determined14655
wild_unimproved945
 
 Germplasm collections (16)
 
 China Cotton Germplasm Collection
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum274
Gossypium barbadense196
Gossypium herbaceum9
Gossypium hirsutum2477
 
 CMD Panel
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium barbadense2
Gossypium hirsutum6
Gossypium mustelinum1
Gossypium raimondii1
Gossypium tomentosum1
 
 GRIN NPGS Cotton Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium anomalum6
Gossypium arboreum1654
Gossypium areysianum1
Gossypium aridum30
Gossypium armourianum10
Gossypium australe26
Gossypium barbadense1537
Gossypium bickii6
Gossypium capitis-viridis1
Gossypium costulatum2
Gossypium cunninghamii6
Gossypium darwinii141
Gossypium davidsonii31
Gossypium gossypioides8
Gossypium harknessii19
Gossypium herbaceum180
Gossypium herbaceum_hirsutum1
Gossypium hirsutum5426
Gossypium hirsutum x barbadense15
Gossypium hybrid2
Gossypium incanum2
Gossypium klotzschianum59
Gossypium laxum7
Gossypium lobatum4
Gossypium longicalyx4
Gossypium mustelinum7
Gossypium nandewarense6
Gossypium nelsonii7
Gossypium pilosum2
Gossypium populifolium18
Gossypium pulchellum1
Gossypium raimondii56
Gossypium robinsonii7
Gossypium schwendimanii3
Gossypium somalense3
Gossypium sp.23
Gossypium stocksii4
Gossypium sturtianum10
Gossypium thurberi36
Gossypium tomentosum13
Gossypium trilobum11
Gossypium triphyllum1
Gossypium turneri8
 
 NCGC Asiatic Cotton Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1669
Gossypium herbaceum163
Gossypium hirsutum6
 
 NCGC Cotton Obsolete Variety Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium barbadense44
Gossypium hirsutum2775
Gossypium hirsutum x barbadense15
Gossypium hybrid3
 
 NCGC Cotton Race Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense5
Gossypium hirsutum2072
Gossypium sp.6
 
 NCGC Cotton Wild Species Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium anomalum6
Gossypium areysianum1
Gossypium aridum14
Gossypium armourianum10
Gossypium australe11
Gossypium bickii5
Gossypium capitis-viridis1
Gossypium costulatum2
Gossypium darwinii140
Gossypium davidsonii31
Gossypium gossypioides6
Gossypium harknessii19
Gossypium hirsutum2
Gossypium incanum2
Gossypium klotzschianum59
Gossypium laxum2
Gossypium lobatum3
Gossypium longicalyx4
Gossypium mustelinum2
Gossypium nandewarense6
Gossypium nelsonii4
Gossypium populifolium2
Gossypium pulchellum1
Gossypium raimondii56
Gossypium robinsonii3
Gossypium schwendimanii1
Gossypium somalense3
Gossypium stocksii4
Gossypium sturtianum6
Gossypium thurberi36
Gossypium tomentosum8
Gossypium trilobum11
Gossypium triphyllum1
Gossypium turneri8
 
 NCGC Gossypium barbadense Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense1476
Gossypium hirsutum41
Gossypium sp.1
 
 NCGC Panel
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense2
Gossypium hirsutum8
 
 NPGS Cotton Plant Variety Protection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense16
Gossypium hirsutum642
 
 NPGS Crop Science Registration (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium barbadense52
Gossypium hirsutum1003
Gossypium hirsutum x barbadense17
Gossypium hirsutum x sturtianum3
Gossypium hybrid6
 
 Pedigrees of Upland and Pima Cultivars
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense21
Gossypium hirsutum636
 
 The National Center for Genetic Resources Preservation (NCGRP) Cotton Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium anomalum1
Gossypium arboreum10
Gossypium australe1
Gossypium barbadense443
Gossypium hirsutum2196
Gossypium hirsutum x barbadense17
Gossypium hybrid7
Gossypium lobatum1
Gossypium stocksii1
Gossypium thurberi1
 
 USDA-ARS Beltsville Cotton Branch Archive
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum38
Gossypium barbadense280
Gossypium herbaceum7
Gossypium hirsutum728
 
 Uzbekistan Cotton Germplasm Collection
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium hirsutum844
Gossypium tricuspidatum5
 
 Images (12337)
Number of images by types
TypeNumber of images
Germplasm12241
Marker52
Morphological Trait27
Species17
 
 Library (179)
 
 cDNA (135)
SpeciesNumber of libraries
Gossypium arboreum13
Gossypium barbadense13
Gossypium herbaceum subsp. africanum1
Gossypium hirsutum105
Gossypium raimondii3
 
 genomic (41)
SpeciesNumber of libraries
Gossypium arboreum3
Gossypium barbadense3
Gossypium exiguum1
Gossypium herbaceum3
Gossypium hirsutum24
Gossypium raimondii4
Gossypium sturtianum1
Gossypium thurberi1
Gossypium trilobum1
 
 unassigned (1)
SpeciesNumber of libraries
Gossypium hirsutum1
 
 SNP_chip (2)
SpeciesNumber of libraries
null null2
 
 Maps (111)
 
 Markers (575844)
 
 AFLP (1962)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum17
Gossypium spp.1945
 
 BAC-end (8)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.8
 
 CAPS (22)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.19
unknown unknown3
 
 DArT (23)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.23
 
 dCAPS (3)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum1
Gossypium spp.2
 
 EST-SSR (2823)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium herbaceum1968
Gossypium raimondii855
 
 ET-ISJ (120)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum120
 
 GENE MARKER (978)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum977
Gossypium spp.1
 
 InDel (549)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium barbadense107
Gossypium hirsutum140
Gossypium spp.302
 
 IT-ISJ (87)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum45
Gossypium spp.42
 
 MTL (70)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium barbadense1
Gossypium hirsutum21
Gossypium spp.47
Gossypium tomentosum1
 
 N/A (55)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum2
Gossypium spp.52
N/A N/A1
 
 RAD (3984)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum3984
 
 RAPD (338)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.63
N/A N/A275
 
 REMAP (4)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.4
 
 RFLP (4576)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium arboreum107
Gossypium barbadense168
Gossypium herbaceum247
Gossypium hirsutum2876
Gossypium raimondii110
Gossypium spp.1068
 
 RGAP (10)
Number of markers by species for each marker type
SpeciesNumber of markers
Oryza spp.6
Pseudomonas syringae2
Triticum spp.1
unknown unknown1
 
 RT (179)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.179
 
 RT-qPCR (86)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum86
 
 SNP (459825)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium armourianum24835
Gossypium barbadense23771
Gossypium hirsutum253358
Gossypium hirsutum x barbadense6295
Gossypium longicalyx70073
Gossypium mustelinum6696
Gossypium sp.31356
Gossypium spp.37045
Gossypium tomentosum6396
 
 SRAP (1084)
Number of markers by species for each marker type
SpeciesNumber of markers
Brassica spp.479
Gossypium spp.578
unknown unknown27
 
 SSR (98823)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium anomalum6654
Gossypium arboreum2047
Gossypium barbadense1745
Gossypium darwinii133
Gossypium herbaceum2562
Gossypium hirsutum73196
Gossypium raimondii7609
Gossypium robinsonii1
Gossypium sp.49
Gossypium spp.4804
N/A N/A4
unknown unknown19
 
 STS (30)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.2
unknown unknown28
 
 TRAP (170)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.170
 
 unknown (35)
Number of markers by species for each marker type
SpeciesNumber of markers
unknown unknown35
 
 Phenotypes (383431)
Trait Name Number of Trait Scores
15 DAI VW incidence (%)3
15 DAI VW index (%)3
30 DAI VW incidence (%)3
30 DAI VW index (%)3
aphid resist31
AREA (%)3255
BN per plant709
boll color8072
boll gossypol glands6469
boll nectaries8662
boll pitting7730
boll point7853
boll shape12479
boll size6664
bract color5154
bract nectaries9420
bract shape5
bract teeth number3611
bract teeth size7141
bract type9791
b (read)2601
BWT (g)6681
canopy type6433
cotton bollworm resist80
days flowering to boll open18
days to 50% boll opening669
days to 50% flowering855
days to 50% seed germinating829
drought tolerance1279
E1 (%)10399
FBNDL (cm)3
FCG2581
FEL (%)1566
ffb pos by node coty 018
FF (estimate)1825
FF (mTx)3
filament color681
FIM (%)3
first fruit branch position (cm)673
FL (estimate)1205
FL (mm)755
FLw (mm)3
FM (%)351
FNC (g-1)3
FNS (g)3
fruiting type3139
FSCI1
FS (cN/tex)2290
FS (estimate)872
fstage VW incidence (%)3
fstage VW index (%)3
FT (unit)3
FUI (%)10333
FUR (%)2210
fusarium wilt resist126
GTO (%)107
leaf BCONC (mg/kg)2
leaf CACONC (mg/kg)2
leaf color18789
leaf CUCONC (mg/kg)2
leaf FECONC (mg/kg)2
leaf gossypol glands10544
leaf KCONC (mg/kg)2
leaf KNACONCR2
leaf lopes729
leaf MGCONC (mg/kg)2
leaf MNCONC (mg/kg)2
leaf NACONC (mg/kg)2
leaf nectaries10237
leaf PCONC (mg/kg)2
leaf SCONC (mg/kg)2
leaf shape17831
leaf size5818
leaf ZNCONC (mg/kg)2
LI (g)5260
lint color16527
locule number per boll1072
LP (%)6919
LP (estimate)274
LVFM (%)3
LY (g/boll)19
LY (g/plant)3
LY (kg/ha)12
LY (lb/acre)5999
main stem diameter (mm)2
MIC (unit)12539
mstage VW incidence (%)12
mstage VW index (%)12
num of mono-branch616
num of stem node658
num of sym-branch655
petal color18591
petal spot16006
petiole BCONC (mg/kg)2
petiole CACONC (mg/kg)2
petiole CUCONC (mg/kg)2
petiole FECONC (mg/kg)2
petiole KCONC (mg/kg)2
petiole KNACONCR2
petiole MGCONC (mg/kg)2
petiole MNCONC (mg/kg)2
petiole NACONC (mg/kg)2
petiole PCONC (mg/kg)2
petiole SCONC (mg/kg)2
petiole ZNCONC (mg/kg)2
photoperiod5790
pink bollworm resist60
plant color31
plant height (cm)861
plant height (m)13330
plant shape13592
plot homogeneity803
plot maturity14080
plot plant stand11964
pollen color14863
population homogeneity5140
productiveness13038
QS (1,1,3,5)2601
QS (2,1,4,3)1152
QS (4.5,2.5,0,3)1152
QS (5,2.5,1,1.5)3898
QS (5,2.5,1.5,1)1152
Rd (%)2601
root BCONC (mg/kg)2
root CACONC (mg/kg)2
root CUCONC (mg/kg)2
root FECONC (mg/kg)2
root KCONC (mg/kg)2
root KNACONCR2
root MGCONC (mg/kg)2
root MNCONC (mg/kg)2
root NACONC (mg/kg)2
root PCONC (mg/kg)2
root SCONC (mg/kg)2
root ZNCONC (mg/kg)2
salinity tolerance52
SCF3
SCY (g/plant)3
SCY (kg/ha)12
seed BCONC (mg/kg)2
seed CACONC (mg/kg)2
seed CUCONC (mg/kg)2
seed energy germinate normal (%)323
seed energy germinate thermostat (%)327
seed FECONC (mg/kg)2
seed fuzz color968
seed fuzz grade3840
seed KCONC (mg/kg)2
seed KNACONCR2
seed MGCONC (mg/kg)2
seed MNCONC (mg/kg)2
seed NACONC (mg/kg)2
seed PCONC (mg/kg)2
seed SCONC (mg/kg)2
seed type4365
seed ZNCONC (mg/kg)2
SFC HVI (%)8716
SFCw (g)3
SI 1000 Seed (g)640
SI (g)6235
SI (g/seed)3
SL2.5 (mm)2171
SL50 (mm)3
SNPB5250
SOC (%)46
SOC (estimate)104
SPC (estimate)51
spider mite resist58
stem BCONC (mg/kg)2
stem CACONC (mg/kg)2
stem color6902
stem CUCONC (mg/kg)2
stem FECONC (mg/kg)2
stem gossypol glands10588
stem KCONC (mg/kg)2
stem KNACONCR2
stem MGCONC (mg/kg)2
stem MNCONC (mg/kg)2
stem NACONC (mg/kg)2
STEMNN3
stem PCONC (mg/kg)2
stem SCONC (mg/kg)2
stem ZNCONC (mg/kg)2
stigma exsertion8952
sympodia branch type355
T0 (g/tex)501
T1 (cN/tex)44
T1 (g/tex)9738
trichome density on leaf16310
trichome density on plant29
trichome density on stem11021
UHML (inch)9699
UHML (mm)58
UQLw (mm)3
verticillium wilt resist204
wet tolerance10
 
 Project (339)
Number of project by types
Project TypeNumber of projects
branch2
breeding15
diversity46
genotyping8
phenotype215
phenotyping3
QTL50
 
 Publications (14835)
Publication Search
Number of publications by type
TypeNumber of publications
Book26
Book Chapter81
Conference Proceedings2199
Journal Article11439
Patent167
Thesis22
 
 QTLs (5342)
Number of QTL by trait category
Trait CategoryNumber of QTLs
biochemical trait189
biotic stress trait273
morphological trait94
phenological trait213
physiological trait78
quality trait3299
stature or vigor trait136
yield component trait3
yield trait1053
 
 SNP Genotype : 71424 markers 25150265 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
N/A N/A4711
Gossypium armourianum1890744660
Gossypium longicalyx1862733628
Gossypium barbadense46911847823
Gossypium arboreum224266
Gossypium hirsutum224878647423
Gossypium sp.2821511116710
Gossypium raimondii11223871
Gossypium tomentosum2397944418
Gossypium mustelinum2226877044
Gossypium spp.1223197121
Gossypium hirsutum x barbadense629512590
 
 SSR Genotype : 2825 markers 14284 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Gossypium arboreum1979
Gossypium barbadense29
Gossypium hirsutum246713423
Gossypium raimondii1033
Gossypium spp.327740
Total282514284
 
 Species (81)
 
 Traits
Number of Traits by Trait Category
Trait CategoryNumber of Traits
abiotic stress trait6
biochemical trait32
biotic stress trait27
morphological trait131
phenological trait13
physiological trait7
processing trait4
quality trait49
stature or vigor trait10
yield component trait8
yield trait12
Number of Trait Descriptors by Trait Descriptor Set
Descriptor Set NameNumber of Descriptors
QTL154
The China Germplasm Evaluation Data32
The US National Cotton Germplasm Collection Evaluations50
The US Regional Breeders Testing Network Data20
The Uzbekistan Germplasm Evaluation Data40
 
 Transcripts