Data Overview

 
 Community Projects (5)
 
 Contacts (664)
Number of contact by type
TypeNumber of contacts
company1
database14
institution13
lab2
organization2
person623
 
 Environment (847)
 
 Genes (3291541)
SourceNumber of genesNumber of mRNA
Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1075071
Gossypium raimondii (D5) 'D5-8' genome ISU_v12509026065
Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1040134
Gossypium arboreum (A2) 'SXY1' genome HAU_v25021349171
Gossypium arboreum (A2) 'SXY1' genome WHU-updated v14327843278
Gossypium anomalum (B1) genome JAAS_v1.2_a1.14275242752
Gossypium thurberi (D1-35) genome ISU_v13152031520
Gossypium longicalyx (F1) genome NSF_v13837852425
Gossypium barbadense (AD2) '3-79' genome HAU_v180876109918
Gossypium stocksii (E1) genome HAU_v14032140330
Gossypium raimondii (D5) 'D5-4' genome NSF_v14074341030
Gossypium tomentosum (AD3) genome HGS_v1.178281112714
Gossypium stocksii (E1) genome ZSTU_v14621546215
Gossypium herbaceum (A1) 'A1a wild' genome HAU_v14194941949
Gossypium barbadense (AD2) '3-79' genome HAU_v2_a171297109778
Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1076943
Gossypium hirsutum (AD1) 'B713' genome NSF_v18229171531
Gossypium klotzschianum (D3-k) genome ISU_v12982534902
Gossypium hirsutum (AD1) 'ZM24' genome CRI_v17385199892
Gossypium bickii (G1) genome HAU_v14085740875
Gossypium sturtianum (C1) genome HAU_v14130841308
Gossypium barbadense (AD2) '3-79' genome HGS_v1.174561108364
Gossypium schwendimanii (D11) genome ISU_v1 3051835775
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v114870074350
Gossypium arboreum (A2) 'SXY1' genome HAU_v14177841778
Gossypium gossypioides (D6) genome CRI_v13960139601
Gossypium stocksii (E1) genome NSF_v13492837889
Gossypium barbadense (AD2) 'Pima90' genome HEAU_v17961379613
Gossypium hirsutum (AD1) 'TM-1' genome CRI_v17375079837
Gossypium trilobum (D8) genome CRI_v13760537605
Gossypium australe (G2) genome CRI_v1.13457738281
Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v14164241652
Gossypium thurberi (D1-5) genome CRI_v14131641316
Gossypium davidsonii (D3d-27) genome ISU_v13002234870
Gossypium herbaceum (A1) 'Mutema' genome WHU_v14395243952
Gossypium laxum (D9) genome ISU_v12603028512
Gossypium armourianum (D2-1) genome ISU_v12344025464
Gossypium hirsutum (AD1) 'Bar32' genome NSF_v17598875988
Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.175376107216
Gossypium aridum (D4) genome ISU_v12754629559
Gossypium anomalum (B1) genome NSF_v13701637016
Gossypioides kirkii genome ISU_v33668036680
Gossypium davidsonii (D3d-8) genome CRI_v1041471
Gossypium anomalum (B1) genome HAU_v14084540861
Gossypium longicalyx (F1) genome HAU_v14163341633
Gossypium tomentosum (AD3) genome HAU_v1072648
Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1040976
Gossypium stephensii (AD7) 'AD701' genome CRI_v17495174951
Gossypium raimondii (D5) genome JGI_v2_a2.13750577267
Gossypium gossypioides (D6) genome ISU_v12242624986
Gossypium lobatum (D7) genome ISU_v12815130295
Gossypium bickii (G1) genome JZU_v14379043790
Gossypium harknessii (D2-2) genome ISU_v12847331153
Gossypium turneri (D10) genome NSF_v1_a23969239692
Gossypium mustelinum (AD4) genome JGI_v1.174660106487
Gossypium ekmanianum (AD6) 'AD602' genome CRI_v17417874178
Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1050333
Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.17047870478
Gossypium rotundifolium (K12) 'Grot K201' genome HAU_v14159041590
Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v18012480124
NCBI Cotton Data43090
Gossypium harknessii (D2-2) genome CRI_v13631436314
Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v17452074520
Gossypium darwinii (AD5) genome HGS_v1.17830397408
Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v18192040960
Gossypium klotzschianum (D3-k) genome CRI_v14325443254
Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1072761
Gossypium raimondii (D5) 'Grai D502' genome HAU_v14082040820
Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.170200115836
Gossypium hirsutum (AD1) 'PSC355' genome USDA_v17574675746
Gossypium herbaceum (A1) 'Wagad' genome USDA_v13910039100
Gossypium trilobum (D8) genome ISU_v12829832895
Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.16657787800
 
 Genomes (72)
Source
Gossypioides kirkii genome ISU_v3
Gossypium anomalum (B1) genome HAU_v1
Gossypium anomalum (B1) genome JAAS_v1.2_a1.1
Gossypium anomalum (B1) genome NSF_v1
Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1
Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Gossypium arboreum (A2) 'SXY1' genome HAU_v1
Gossypium arboreum (A2) 'SXY1' genome HAU_v2
Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Gossypium aridum (D4) genome ISU_v1
Gossypium armourianum (D2-1) genome ISU_v1
Gossypium australe (G2) genome CRI_v1.1
Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
Gossypium barbadense (AD2) 'Pima90' genome HEAU_v1
Gossypium bickii (G1) genome HAU_v1
Gossypium bickii (G1) genome JZU_v1
Gossypium darwinii (AD5) genome HGS_v1.1
Gossypium davidsonii (D3d-27) genome ISU_v1
Gossypium davidsonii (D3d-8) genome CRI_v1
Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1
Gossypium gossypioides (D6) genome CRI_v1
Gossypium gossypioides (D6) genome ISU_v1
Gossypium harknessii (D2-2) genome CRI_v1
Gossypium harknessii (D2-2) genome ISU_v1
Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1
Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Gossypium herbaceum (A1) 'Wagad' genome USDA_v1
Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1
Gossypium hirsutum (AD1) 'B713' genome NSF_v1
Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1
Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1
Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1
Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1
Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1
Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gossypium klotzschianum (D3-k) genome CRI_v1
Gossypium klotzschianum (D3-k) genome ISU_v1
Gossypium laxum (D9) genome ISU_v1
Gossypium lobatum (D7) genome ISU_v1
Gossypium longicalyx (F1) genome HAU_v1
Gossypium longicalyx (F1) genome NSF_v1
Gossypium mustelinum (AD4) genome JGI_v1.1
Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1
Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Gossypium raimondii (D5) 'D5-8' genome ISU_v1
Gossypium raimondii (D5) genome JGI_v2_a2.1
Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1
Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Gossypium rotundifolium (K12) 'Grot K201' genome HAU_v1
Gossypium schwendimanii (D11) genome ISU_v1
Gossypium stephensii (AD7) 'AD701' genome CRI_v1
Gossypium stocksii (E1) genome HAU_v1
Gossypium stocksii (E1) genome NSF_v1
Gossypium stocksii (E1) genome ZSTU_v1
Gossypium sturtianum (C1) genome HAU_v1
Gossypium thurberi (D1-35) genome ISU_v1
Gossypium thurberi (D1-5) genome CRI_v1
Gossypium tomentosum (AD3) genome HAU_v1
Gossypium tomentosum (AD3) genome HGS_v1.1
Gossypium trilobum (D8) genome CRI_v1
Gossypium trilobum (D8) genome ISU_v1
Gossypium turneri (D10) genome NSF_v1_a2
 
 Genotype SNP : 70636 markers 30966621 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Gossypium armourianum1890924216
Gossypium longicalyx1862910525
Gossypium barbadense46892293056
Gossypium hirsutum2190210553032
Gossypium sp.2821513800788
Gossypium tomentosum23971172179
Gossypium mustelinum22261088539
Gossypium spp.1160211696
Gossypium hirsutum x barbadense629512590
 
 Genotype SSR : 3169 markers 16692 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Gossypium arboreum22119
Gossypium barbadense29
Gossypium hirsutum275115342
Gossypium raimondii51343
Gossypium spp.341867
N/A N/A212
Total316916692
 
 Germplasm (20456)
Search Germplasm
Number of germpasm by types
Germplasm TypeNumber of germplasm
breeding_germplasm8720
cultivar1963
genetic_stock347
landrace687
obsolete_cultivar2624
panel2
parental_line14
population205
TBD: stock type to be determined3022
wild_unimproved2872
 
 Germplasm collections (16)
 
 China Cotton Germplasm Collection
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum277
Gossypium barbadense199
Gossypium herbaceum9
Gossypium hirsutum2497
 
 CMD Panel
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium barbadense2
Gossypium hirsutum6
Gossypium mustelinum1
Gossypium raimondii1
Gossypium tomentosum1
 
 GRIN NPGS Cotton Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium anomalum8
Gossypium anomalum x barbadense1
Gossypium arboreum1693
Gossypium arboreum x hirsutum1
Gossypium areysianum2
Gossypium aridum30
Gossypium armourianum10
Gossypium australe29
Gossypium barbadense1607
Gossypium barbadense x hirsutum2
Gossypium barbadense x tomentosum9
Gossypium bickii6
Gossypium capitis-viridis1
Gossypium costulatum5
Gossypium cunninghamii7
Gossypium darwinii141
Gossypium davidsonii31
Gossypium exiguum1
Gossypium gossypioides8
Gossypium harknessii21
Gossypium herbaceum190
Gossypium hirsutum6076
Gossypium hirsutum x armourianum1
Gossypium hirsutum x barbadense18
Gossypium hirsutum x sturtianum3
Gossypium hybrid9
Gossypium incanum4
Gossypium klotzschianum60
Gossypium laxum9
Gossypium lobatum7
Gossypium longicalyx4
Gossypium mustelinum22
Gossypium nandewarense6
Gossypium nelsonii8
Gossypium pilosum5
Gossypium populifolium22
Gossypium pulchellum1
Gossypium raimondii56
Gossypium robinsonii10
Gossypium schwendimanii3
Gossypium somalense3
Gossypium sp.25
Gossypium spp.1
Gossypium stocksii4
Gossypium sturtianum10
Gossypium thurberi39
Gossypium tomentosum28
Gossypium trilobum11
Gossypium triphyllum2
Gossypium turneri8
 
 NCGC Asiatic Cotton Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1740
Gossypium herbaceum187
Gossypium hirsutum35
 
 NCGC Cotton Obsolete Variety Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense2
Gossypium hirsutum395
 
 NCGC Cotton Race Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense5
Gossypium hirsutum2111
Gossypium sp.6
 
 NCGC Cotton Wild Species Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium anomalum7
Gossypium areysianum3
Gossypium aridum14
Gossypium armourianum10
Gossypium australe15
Gossypium barbadense7
Gossypium bickii6
Gossypium capitis-viridis1
Gossypium costulatum2
Gossypium cunninghamii1
Gossypium darwinii144
Gossypium davidsonii32
Gossypium gossypioides6
Gossypium harknessii20
Gossypium incanum4
Gossypium klotzschianum60
Gossypium laxum5
Gossypium lobatum6
Gossypium longicalyx4
Gossypium mustelinum23
Gossypium nandewarense6
Gossypium nelsonii5
Gossypium pilosum1
Gossypium populifolium2
Gossypium raimondii56
Gossypium robinsonii7
Gossypium schwendimanii1
Gossypium somalense3
Gossypium stocksii4
Gossypium sturtianum8
Gossypium thurberi39
Gossypium tomentosum28
Gossypium trilobum11
Gossypium triphyllum2
Gossypium turneri8
 
 NCGC Gossypium barbadense Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense1542
Gossypium hirsutum44
Gossypium sp.1
 
 NCGC Panel
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense2
Gossypium hirsutum8
 
 NPGS Cotton Plant Variety Protection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense18
Gossypium hirsutum751
 
 NPGS Crop Science Registration (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium barbadense57
Gossypium harknessii1
Gossypium herbaceum1
Gossypium hirsutum1149
Gossypium hirsutum x barbadense17
Gossypium hirsutum x sturtianum3
Gossypium hybrid4
Gossypium sp.2
 
 Pedigrees of Upland and Pima Cultivars (v2005)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense21
Gossypium hirsutum636
 
 Uzbekistan Cotton Germplasm Collection
Number of germplasm
SpeciesNumber of germplasm
Gossypium hirsutum917
Gossypium TBD1
 
 Images (45155)
Number of images by types
TypeNumber of images
Germplasm45025
Marker6
Morphological Trait101
Species61
 
 Library (179)
 
 cDNA (135)
SpeciesNumber of libraries
Gossypium arboreum13
Gossypium barbadense13
Gossypium herbaceum subsp. africanum1
Gossypium hirsutum105
Gossypium raimondii3
 
 genomic (41)
SpeciesNumber of libraries
Gossypium arboreum3
Gossypium barbadense3
Gossypium exiguum1
Gossypium herbaceum3
Gossypium hirsutum24
Gossypium raimondii4
Gossypium sturtianum1
Gossypium thurberi1
Gossypium trilobum1
 
 SNP_chip (2)
SpeciesNumber of libraries
Gossypium hirsutum1
Gossypium spp.1
 
 unassigned (1)
SpeciesNumber of libraries
Gossypium hirsutum1
 
 Maps (119)
 
 Markers (778944)
 
 AFLP (1971)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum17
Gossypium spp.1954
 
 BAC-end (8)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.8
 
 CAPS (24)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum2
Gossypium spp.19
unknown unknown3
 
 DArT (23)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.23
 
 dCAPS (3)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum1
Gossypium spp.2
 
 EST-SSR (2823)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium herbaceum1968
Gossypium raimondii855
 
 ET-ISJ (120)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum120
 
 gene marker (1122)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium barbadense1
Gossypium hirsutum995
Gossypium spp.126
 
 Indel (12788)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium arboreum12239
Gossypium barbadense107
Gossypium hirsutum140
Gossypium spp.302
 
 IT-ISJ (86)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum44
Gossypium spp.42
 
 MTL (35)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium arboreum3
Gossypium barbadense1
Gossypium hirsutum21
Gossypium spp.9
Gossypium tomentosum1
 
 qPCR (15)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum15
 
 RAD (3984)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum3984
 
 RAPD (338)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.63
N/A N/A275
 
 REMAP (191)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.191
 
 RFLP (4576)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium arboreum107
Gossypium barbadense168
Gossypium herbaceum247
Gossypium hirsutum2876
Gossypium raimondii110
Gossypium spp.1068
 
 RGAP (10)
Number of markers by species for each marker type
SpeciesNumber of markers
Oryza spp.6
Pseudomonas syringae2
Triticum spp.1
unknown unknown1
 
 RT (187)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum8
Gossypium spp.179
 
 RT-qPCR (86)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum86
 
 SNP (483329)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium arboreum12971
Gossypium armourianum24835
Gossypium barbadense23771
Gossypium hirsutum263623
Gossypium hirsutum x barbadense6295
Gossypium longicalyx70073
Gossypium mustelinum6696
Gossypium sp.31356
Gossypium spp.37313
Gossypium tomentosum6396
 
 SRAP (1090)
Number of markers by species for each marker type
SpeciesNumber of markers
Brassica spp.479
Gossypium spp.584
unknown unknown27
 
 SSR (265840)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium anomalum6654
Gossypium arboreum2047
Gossypium barbadense1851
Gossypium darwinii133
Gossypium herbaceum2562
Gossypium hirsutum151101
Gossypium raimondii18619
Gossypium robinsonii1
Gossypium sp.49
Gossypium spp.82800
N/A N/A4
unknown unknown19
 
 STS (30)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.2
unknown unknown28
 
 TRAP (170)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.170
 
 unknown (95)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum2
Gossypium spp.52
N/A N/A1
unknown unknown40
 
 Phenotypes (577898)
Trait CategoryNumber of TraitsNumber of Trait Scores
abiotic stress trait21548
biochemical trait232787
biotic stress trait153191
morphological trait79321638
phenological trait722926
physiological trait423555
quality trait27127153
stature or vigor trait517676
yield component trait613803
yield trait843621
 
 Project (189)
Number of project by types
Project TypeNumber of projects
branch2
genotype17
GWAS3
image18
phenotype76
QTL73
 
 Publications (16839)
Publication Search
Number of publications by type
TypeNumber of publications
Book27
Book Chapter81
Conference Proceedings2199
Journal Article13294
Patent310
Thesis23
 
 QTLs (7236)
Number of QTL by trait category
Trait CategoryNumber of QTLs
biochemical trait189
biotic stress trait273
morphological trait263
phenological trait215
physiological trait126
quality trait4553
stature or vigor trait184
yield component trait4
yield trait1429
 
 Species (87)
 
 Traits (310)
Number of Traits by Trait Category
Trait CategoryNumber of Traits
abiotic stress trait6
agronomical trait1
biochemical trait36
biotic stress trait35
fertility or sterility trait8
morphological trait124
phenological trait14
physiological trait12
processing trait3
quality trait41
stature or vigor trait9
yield component trait9
yield trait12
Number of Trait Descriptors by Trait Descriptor Set
Descriptor Set NameNumber of Descriptors
cotton_trait_descriptor322
 
 Transcripts