Data Overview

 
 Community Projects (1)
 
 Contacts (593)
Number of contact by type
TypeNumber of contacts
company1
database14
institution13
lab2
organization2
person561
 
 Environment (84)
 
 Genes (206241)
SourceNumber of genesNumber of mRNA
NCBI Cotton Data173820
Gossypium hirsutum (AD1) Genome CGP-BGI Assembly v1.0 & Annotation v1.0076943
Gossypium raimondii (D5) Draft Genome BGI-CGP v1.0 Assembly & Annotation040976
Gossypium hirsutum (AD1) Genome NAU-NBI Assembly v1.1 & Annotation v1.17047870478
Gossypium raimondii (D5) genome JGI assembly v2.0 (annot v2.1)3750577267
Gossypium barbadense (AD2) Genome HAU-SGI Assembly v1.0 & Annotation v1.080876109918
Gossypium arboreum (A2) Genome BGI Assembly v2.0 & Annotation v1.0040134
 
 Genomes (6)
 
 Genotypes
 
 SNP sets (3)
Project name
UCD_InDel_genotyping_2009
UCD_SNP_T3-RIL_mapping_2009
UCD_SNP_genotyping_2009
 
 SSR set (7)
 
 Dong_2003
SpeciesNumber of markersNumber of genotypic of measurements
Gossypium hirsutum51548
 
 Du_2005
SpeciesNumber of markersNumber of genotypic of measurements
Gossypium arboreum1251
Gossypium hirsutum10427382
 
 Fang_2006
SpeciesNumber of markersNumber of genotypic of measurements
Gossypium hirsutum1992312
 
 NCGC SNTD 2015 - SSR
SpeciesNumber of markersNumber of genotypic of measurements
Gossypium hirsutum104204760
 
 Scheffler
SpeciesNumber of markersNumber of genotypic of measurements
Gossypium hirsutum8249434
Gossypium raimondii881
 
 TN-RIL (F5:9) genotyping
SpeciesNumber of markersNumber of genotypic of measurements
Gossypium arboreum141358
Gossypium barbadense197
Gossypium hirsutum21721049
Gossypium spp.201940
 
 Ulloa_2006
SpeciesNumber of markersNumber of genotypic of measurements
Gossypium hirsutum11374467
 
 Germplasm (16219)
Number of germpasm by types
Germplasm TypeNumber of germplasm
breeding_research_material447
cultivar187
germplasm49
landrace25
population131
TBD: stock type to be determined14469
wild_unimproved911
 
 Germplasm collections (16)
 
 China Cotton Germplasm Collection
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum275
Gossypium barbadense196
Gossypium herbaceum9
Gossypium hirsutum2478
 
 CMD Panel
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium barbadense2
Gossypium hirsutum6
Gossypium mustelinum1
Gossypium raimondii1
Gossypium tomentosum1
 
 GRIN Cotton Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium anomalum6
Gossypium arboreum1655
Gossypium areysianum1
Gossypium aridum30
Gossypium armourianum10
Gossypium australe26
Gossypium barbadense1537
Gossypium bickii6
Gossypium capitis-viridis1
Gossypium costulatum2
Gossypium cunninghamii6
Gossypium darwinii141
Gossypium davidsonii31
Gossypium gossypioides8
Gossypium harknessii19
Gossypium herbaceum180
Gossypium herbaceum_hirsutum1
Gossypium hirsutum5426
Gossypium hirsutum x barbadense15
Gossypium hybrid2
Gossypium incanum2
Gossypium klotzschianum59
Gossypium laxum7
Gossypium lobatum4
Gossypium longicalyx4
Gossypium mustelinum7
Gossypium nandewarense6
Gossypium nelsonii7
Gossypium pilosum2
Gossypium populifolium18
Gossypium pulchellum1
Gossypium raimondii56
Gossypium robinsonii7
Gossypium schwendimanii3
Gossypium somalense3
Gossypium sp.23
Gossypium stocksii4
Gossypium sturtianum10
Gossypium thurberi36
Gossypium tomentosum13
Gossypium trilobum11
Gossypium triphyllum1
Gossypium turneri8
 
 NCGC Asiatic Cotton Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1669
Gossypium herbaceum163
Gossypium hirsutum6
 
 NCGC Cotton Obsolete Variety Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium barbadense43
Gossypium hirsutum2776
Gossypium hirsutum x barbadense15
Gossypium hybrid3
 
 NCGC Cotton Race Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense5
Gossypium hirsutum2073
Gossypium sp.6
 
 NCGC Cotton Wild Species Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium anomalum6
Gossypium areysianum1
Gossypium aridum14
Gossypium armourianum10
Gossypium australe11
Gossypium bickii5
Gossypium capitis-viridis1
Gossypium costulatum2
Gossypium darwinii140
Gossypium davidsonii31
Gossypium gossypioides6
Gossypium harknessii19
Gossypium hirsutum2
Gossypium incanum2
Gossypium klotzschianum59
Gossypium laxum2
Gossypium lobatum3
Gossypium longicalyx4
Gossypium mustelinum2
Gossypium nandewarense6
Gossypium nelsonii4
Gossypium populifolium2
Gossypium pulchellum1
Gossypium raimondii56
Gossypium robinsonii3
Gossypium schwendimanii1
Gossypium somalense3
Gossypium stocksii4
Gossypium sturtianum6
Gossypium thurberi36
Gossypium tomentosum8
Gossypium trilobum11
Gossypium triphyllum1
Gossypium turneri8
 
 NCGC Gossypium barbadense Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense1476
Gossypium hirsutum41
Gossypium sp.1
 
 NCGC Panel
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense2
Gossypium hirsutum8
 
 NPGS Cotton Plant Variety Protection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense16
Gossypium hirsutum643
 
 NPGS Crop Science Registration (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium barbadense52
Gossypium hirsutum1004
Gossypium hirsutum x barbadense17
Gossypium hirsutum x sturtianum3
Gossypium hybrid6
 
 Pedigrees of Upland and Pima Cultivars
Number of germplasm
SpeciesNumber of germplasm
Gossypium barbadense21
Gossypium hirsutum637
 
 The National Center for Genetic Resources Preservation (NCGRP) Cotton Collection (USA)
Number of germplasm
SpeciesNumber of germplasm
Gossypium anomalum1
Gossypium arboreum10
Gossypium australe1
Gossypium barbadense443
Gossypium hirsutum2197
Gossypium hirsutum x barbadense17
Gossypium hybrid7
Gossypium lobatum1
Gossypium stocksii1
Gossypium thurberi1
 
 USDA-ARS Beltsville Cotton Branch Archive
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum38
Gossypium barbadense280
Gossypium herbaceum7
Gossypium hirsutum729
 
 Uzbekistan Cotton Germplasm Collection
Number of germplasm
SpeciesNumber of germplasm
Gossypium arboreum1
Gossypium hirsutum845
Gossypium tricuspidatum5
 
 Images (12337)
Number of images by types
TypeNumber of images
Germplasm12241
Marker52
Morphological Trait27
Species17
 
 Library (192)
 
 cDNA (135)
SpeciesNumber of libraries
Gossypium arboreum13
Gossypium barbadense13
Gossypium herbaceum subsp. africanum1
Gossypium hirsutum105
Gossypium raimondii3
 
 clone (14)
SpeciesNumber of libraries
Gossypium arboreum2
Gossypium barbadense1
Gossypium hirsutum11
 
 genomic (41)
SpeciesNumber of libraries
Gossypium arboreum3
Gossypium barbadense3
Gossypium exiguum1
Gossypium herbaceum3
Gossypium hirsutum24
Gossypium raimondii4
Gossypium sturtianum1
Gossypium thurberi1
Gossypium trilobum1
 
 unassigned (2)
SpeciesNumber of libraries
Gossypium hirsutum2
 
 Maps (80)
 
 Markers (404116)
 
 AFLP (1945)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.1945
 
 BAC-end (8)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.8
 
 CAP (18)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.18
 
 DArT (23)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.23
 
 ET-ISJ (120)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum120
 
 GENE MARKER (1)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.1
 
 InDel (302)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.302
 
 IT-ISJ (128)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum86
Gossypium spp.42
 
 MTL (78)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium barbadense1
Gossypium hirsutum21
Gossypium spp.55
Gossypium tomentosum1
 
 N/A (55)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum2
Gossypium spp.52
N/A N/A1
 
 RAD (3984)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum3984
 
 RAPD (82)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.65
N/A N/A17
 
 REMAP (4)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.4
 
 RFLP (4580)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium arboreum107
Gossypium barbadense168
Gossypium herbaceum247
Gossypium hirsutum2875
Gossypium raimondii110
Gossypium spp.1073
 
 RGAP (10)
Number of markers by species for each marker type
SpeciesNumber of markers
Oryza spp.6
Pseudomonas syringae2
Triticum spp.1
unknown unknown1
 
 RT (179)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.179
 
 RT-qPCR (20)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium hirsutum20
 
 SNP (302735)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium armourianum24829
Gossypium barbadense23681
Gossypium hirsutum169427
Gossypium longicalyx34550
Gossypium mustelinum6663
Gossypium sp.256
Gossypium spp.36933
Gossypium tomentosum6396
 
 SRAP (1076)
Number of markers by species for each marker type
SpeciesNumber of markers
Brassica spp.471
Gossypium spp.578
unknown unknown27
 
 SSR (88593)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium arboreum2047
Gossypium barbadense1745
Gossypium herbaceum2299
Gossypium hirsutum70393
Gossypium raimondii7044
Gossypium robinsonii1
Gossypium sp.7
Gossypium spp.5057
 
 STS (2)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.2
 
 TRAP (170)
Number of markers by species for each marker type
SpeciesNumber of markers
Gossypium spp.170
 
 unknown (3)
Number of markers by species for each marker type
SpeciesNumber of markers
unknown unknown3
 
 Phenotypes (383594)
Trait Name Number of Trait Scores
2.5% Span Length1831
50% Span Length1827
AREA%665
Arealometer A1465
Arealometer D1463
Boll color (CN)263
Boll length (mm)279
Boll setting type (CN)42
Boll Shape (CN)2948
Boll Shape (UZ)649
Boll size (CN)1174
Boll size (g)3
Bolls per plant650
Boll weight (g/boll)3383
Boll width (mm)279
Bract shape (CN)5
Branch height (cm)658
Calyx hairs166
Colorimeter b659
Colorimeter Rd654
Days to 50% boll opening651
Days to 50% flowering837
Days to emergence829
(Draw SL) Mean720
(Draw SL) UHM720
Drought tolerance (CN)1283
E11771
Elongation1
Embryo_index 1321
Embryo oil percent1321
Embryo percent1321
FG174
Fiber elongation (%)2172
Fiber fineness (m/g)1823
Fiber fineness (millitex)26
Fiber length (inch)3
Fiber length (mm)1851
Fiber strength (cN/tex)888
Fiber uniformity1
Fiber uniformity %8
Fiber uniformity index501
Filament color (CN)681
Flower score384
Fuzz color (UZ)1
Fuzz grade (CN)84
GALL446
Gossypol (CN)65
Growth habit (UZ)808
Hairiness_leaf (CN)475
Hairiness_plant (UZ)29
HVI Color grade466
Leaf color5838
Leaf color (CN)45
Leaf hairs3273
Leaf lac283
Leaf lobe number729
Leaf nectar (CN)78
Leaf shape1669
Leaf shape (CN)2950
Leaf shape (UZ)833
Lint color6266
Lint color (CN)62
Lint color (UZ)637
Lint index (g)534
Lint percent (%)4298
Lint yield (g)6
Lint yield (kg/ha)1454
log(Micronaire)1
Maturity2213
Maturity (CN)594
micronaire1459
Micronaire (unit)2334
Number of monopodia616
Number of stem nodes658
Number of sympodia655
petal color4598
Petal color (CN)2863
Petal color (UZ)627
petal spot5003
Petal spot (UZ)514
Photoperiod (UZ)608
Plant color (UZ)31
Plant height (cm)840
Plant height (m)3088
Plant type12
Plant type (CN)2918
Pollen color4566
Pollen color (CN)609
Pollen color (UZ)623
Population homogeniety (UZ)803
Productiveness2072
Protein percent (%)843
(Raw ST) Mean1483
(Raw ST) UHM1460
REPR446
Resistance to aphid (CN)32
Resistance to bacterial blight26
Resistance to bollworm (CN)80
Resistance to Coletotrichum gossypii634
Resistance to fusarium wilt (CN)125
Resistance to pink bollworm (CN)60
Resistance to spider mite (CN)58
Resistance to Verticillium dahliae649
Resistance to Verticillium dahliae (CN)203
Salinity tolerance (CN)53
Seed coat index (g)1321
Seed coat percent (%)1321
Seed color (CN)1
Seed cotton yield (g)3
Seed cotton yield (g/plot)3
Seed Energy (%)323
Seed index (g)3785
Seed oil content102
Seed oil percent (%)1321
Seeds per boll208
Seed termostat (%)327
Seed type844
Seed weight of 1000 (g)640
Short fiber content (%)481
Short fiber index3
sqrt(SCY)1
STIGMA96
T01957
T13232
Type of sympodia (CN)355
Wet tolerance (CN)10
 
 Publications (16563)
Number of publications by type
TypeNumber of publications
Book26
Book Chapter80
Journal Article12686
Patent167
Thesis22
 
 QTLs (1026)
Number of QTL by trait category
Trait CategoryNumber of QTLs
quality trait551
stress trait57
phenological trait2
yield trait241
morphological trait46
biochemical trait98
stature or vigor trait8
physiological trait2
biotic stress trait67
 
 Species (49)
 
 Traits