Skip to main content
Home

Search form

  • Species
    • arboreum
    • australe
    • barbadense
    • darwinii
    • herbaceum
    • hirsutum
    • kirkii
    • longicalyx
    • mustelinum
    • raimondii
    • thurberi
    • tomentosum
    • turneri
    • others
  • Data
    • Data Contributors
    • Data Overview
    • Data Download
    • Data Submission
    • Community Archives
    • Community Projects
    • Cotton Trait Ontology
    • Description of Sequence Datasets
    • Nomenclatures
    • Links to Variety Testing Data
    • Links to External Resources
  • Search
    • Search Contact
    • Search Genes and Transcripts
    • Search Genotype
    • Search Germplasm
    • Search Images
    • Search Map
    • Search Markers
    • Search Markers by Locus
    • Search Orthologs and Paralogs
    • Search Publications
    • Search QTL/GWAS
    • Search Sequences
    • Search Trait
    • Search Trait Descriptors
    • Search Trait Evaluation
    • MegaSearch
  • Tools
    • BIMS
    • BLAST+
    • CottonCyc
    • Expression Heatmap
    • Feature_ID_Converter
    • JBrowse
    • Map Viewer
    • Primer3
    • Sequence Retrieval
    • Synteny Viewer
  • ICGI
    • ICGI Home
    • ICGI FAQ
    • ICGI News
    • Become an ICGI Member
    • Forgotten Account Details?
    • Membership
    • ICGI Conferences
    • ICGI Elections
    • ICGI List Archives
  • General
    • About CottonGen
    • Cite CottonGen
    • CottonGen Citations
    • Conferences
    • Data Contributors
    • Disclaimer
    • Employment
    • External Resources
    • Mailing Lists
    • Mailing List Archives
    • News Archive
    • Newsletters
    • Presentations
    • Steering Committee
    • Usage
    • Work Completed
    • Work in Progress
  • Help
    • Contact
    • User Manual
    • Video Tutorials
    • CottonGen FAQ
    • ICGI FAQ
  • Login
 If you use CottonGen please cite:  Yu, J. et al (2021) CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research.  Plants 2021, 10(12), 2805

CottonGen Home

Genomic, Genetic and Breeding Resources for Cotton Research Discovery and Crop Improvement

News and Events

  • Three BIMS How-to Use videos available (4/25)
  • HAU 50 genomes' assembly and annotation data downloadable (4/25)
  • The 2025 Election for ICGI Officers Starts (4/2/25)
  • G. hirsutum (AD1) 'EM22' genome HAU v1.0 data available (3/25)
more

Major Species Quick Start

arboreum

barbadense

herbaceum

hirsutum

Tools Quick Start

Genomics
  • View Genomes
  • Find Sequences
  • Search Genes
  • BLAST Sequences
Genetics
  • Search Maps
  • Search Markers
  • Search QTL/GWAS
  • Compare Maps
Breeding
  • Search Phenotype
  • Search Genotype
  • Search Germplasm
  • Manage Breeding
General
  • User Manual
  • Presentations
  • Newsletters
  • Contact Us

Cotton Incorporated USDA ARS Bayer Corteva SAAESD WSU

CottonGen is developed by the Mainlab at Washington State University. 
Copyright © 2010-2025. This site is designed to work with IE, Chrome, Firefox, Safari and Opera. Contact us | follow us