Data Download

Please note, that other data can be downloaded through the search interfaces. Only major data is available through this downloads page.

Whole Genomes Sequence Data (FASTA or GFF3 | EXCEL | TXT files) include:
- From original genome sequencing project: assemblies and annotations
- From CottonGen: functional annotations, protein homologies, marker and transcript alignments
- Click to view and download data of:
  - Diploids
    - A genome ^{last update 10/2/23}
    - D1-D4 genomes ^{last update 10/07/23}
    - D5 genome ^{last update 10/30/24}
    - D6-D11 genomes ^{last update 10/07/23}
    - Other diploid genomes ^{last update 10/2/23}
    - Gossypioides and Kokia species^{New 5/8/24}
  - Tetraploids
    - G. hirsutum (AD1) TM-1 ^{last update 3/19/25}
    - G. hirsutum (AD1): Except TM-1s ^{last update 3/26/25}
    - G. barbadense (AD2): 3-79 | Hai-7124 | Pima90 | M210936 & AD3-AD7 ^{last update11/8/24}
    - G. barbadense (AD2): HAU 12 G. barbadense genome dataset
  - HAU 50 Genomes Assembly and Annotation Data (Ref: Li, et al., Nature Genetics. 56:2562–2573, 2024 Oct 29)
    - NGN-56-2562: HAU 15 G. arboreum genomes^{New 4/2/25}
    - NGN-56-2562: HAU 35 G. hirsutum genomes^{New 4/2/25}

Transposable Element (TE) Sequences (FASTA)^05/10/21
- JAAS G. raimondii TEs

Marker Data (FASTA | EXCEL | TXT) ^{last update 11/28/18}
- Marker sequences
- Marker primer and source information

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