Download G. hirsutum (AD1) Genome Data

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  Sequencing Institute and Genome
Assembly- by genome sequencing project BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1 CRI v1 WHU v1new UTX v2.1new CRI_ZM24 v1
FASTA Files                  
     * Chromosomes + Scaffolds 26+9128 26+288,273 26+5,329 26+2,164 26+12,072 26+584 26+316 26+999 26+2221
GFF3 | EXCEL | TXT  Files                  
     * Chromosomes + Scaffolds 26+9128                
Annotation - by genome sequencing project BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1 CRI v1 WHU v1new UTX v2.1new CRI_ZM24 v1
FASTA Files                  
    * Predicted coding sequences 76,943 70,478 87,800 115,835 72,761 79,703 74,350 107,216 99,706  
    * Predicted protein sequences 76,943 70,478 87,800 115,835 72,761 79,703 74,350 107,216 99,706
    * Predicted gene sequences     66,577         75,376  
GFF3 | EXCEL | TXT  Files                  
    * Predicted gene alignments     FTP         FTP  
    * Predicted gene with exon alignments FTP FTP FTP FTP FTP FTP FTP FTP FTP
Annotation - by CottonGen Team BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1 CRI v1 WHU v1new UTX v2.1new CRI_ZM24 v1
GFF3 | EXCEL | TXT  files                  
    * Functional                  
          - GO assignments from InterProScan FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - IPR assignments from InterProScan FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - Genes in KEGG Pathways FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - Genes mapped to KEGG orthologs FTP FTP FTP FTP FTP FTP FTP FTP FTP
    * Marker Alignments updated 7/19                  
          - CottonGen RFLP-RAD markers (11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - CottonGen SSR markers (11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - CottonGen SNP markers (11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - CottonGen InDel markers (11/18) FTP FTP FTP   FTP FTP FTP FTP FTP
    * Protein Homologies updated 7/19                  
          - Arabidopsis thaliana Araport11 FTP FTP FTP FTP(tair10) FTP(tair10) FTP FTP FTP FTP(tair10)
          - NCBI nr (v. m/yy=5/18) FTP FTP FTP FTP(4/18) FTP FTP FTP FTP FTP
          - Uniprot swissprot (v. m/yy=1/19) FTP FTP FTP FTP(5/18) FTP FTP FTP FTP FTP
          - Uniprot trembl (v. m/yy=1/19) FTP FTP FTP FTP(5/18) FTP FTP FTP FTP FTP
    * Unigene & Transcript Alignments                   
          - G. arboreum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - G. barbadense CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - G. hirsutum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP
          - G. raimondii CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP