Download G. hirsutum (AD1) Genome Data

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  Sequencing Institute and Genome
Assembly- by genome sequencing project BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1 CRI v1 WHU v1 UTX v2.1 ZM24 NDM8new B713new Bar32new
FASTA Files                        
     * Chromosomes + Scaffolds 26+9128 26+288,273 26+5,329 26+2,164 26+12,072 26+584 26+316 26+999 26+2221 26+327 26 26
GFF3 | EXCEL | TXT  Files                        
     * Chromosomes + Scaffolds 26+9128                      
Annotation - by genome sequencing project BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1 CRI v1 WHU v1 UTX v2.1 ZM24 NDM8new B713new Bar32new
FASTA Files                        
    * Predicted coding sequences 76,943 70,478 87,800 115,835 72,761 79,703 74,350 107,216 99,706 80,123 78,475 78,326
    * Predicted protein sequences 76,943 70,478 87,800 115,835 72,761 79,703 74,350 107,216 99,706 80,123 78,475 78,326
    * Predicted gene sequences     66,577         75,376        
GFF3 | EXCEL | TXT  Files                        
    * Predicted gene alignments     FTP         FTP        
    * Predicted gene with exon alignments FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP
Annotation - by CottonGen Team BGI v1 NBI v1.1 JGI v1.1 HAU v1 ZJU v2.1 CRI v1 WHU v1 UTX v2.1 ZM24 NDM8new B713new Bar32new
GFF3 | EXCEL | TXT  files                        
    * Functional                        
          - GO assignments from InterProScan FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - IPR assignments from InterProScan FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - Genes in KEGG Pathways FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - Genes mapped to KEGG orthologs FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
    * Marker Alignments updated 7/19                        
          - CottonGen RFLP-RAD markers (11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - CottonGen SSR markers (11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - CottonGen SNP markers (11/18) FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - CottonGen InDel markers (11/18) FTP FTP FTP   FTP FTP FTP FTP FTP FTP    
    * Protein Homologies updated 7/19                        
          - Arabidopsis thaliana Araport11 FTP FTP FTP FTP(tair10) FTP(tair10) FTP FTP FTP FTP(tair10) FTP    
          - NCBI nr (v. m/yy=5/18) FTP FTP FTP FTP(4/18) FTP FTP FTP FTP FTP FTP    
          - Uniprot swissprot (v. m/yy=1/19) FTP FTP FTP FTP(5/18) FTP FTP FTP FTP FTP FTP    
          - Uniprot trembl (v. m/yy=1/19) FTP FTP FTP FTP(5/18) FTP FTP FTP FTP FTP FTP    
    * Unigene & Transcript Alignments                         
          - G. arboreum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - G. barbadense CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - G. hirsutum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP    
          - G. raimondii CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP FTP FTP FTP