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- Contact: Yuan, Daojun
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Assembly - by genome sequencing project
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Annotation - by genome sequencing project
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| Sequencing Institute and Genome | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Assembly- by genome sequencing project | GB249 | AZB51 | AZB375 | Yuma | AZK101 | Giza7 | AZB339 | AZB634 | GB660 | GB776 | Junhai1 | CEG | |
| FASTA Files | |||||||||||||
| * Chromosomes + Scaffolds | 26+389 | 26+773 | 26+137 | 26+315 | 26+259 | 26+415 | 26+608 | 26+616 | 26+424 | 26+1276 | 26+610 | 26+542 | |
| GFF3 | EXCEL | TXT Files | |||||||||||||
| * Chromosomes + Scaffolds | |||||||||||||
| Assembly- by genome sequencing project | GB249 | AZB51 | AZB375 | Yuma | AZK101 | Giza7 | AZB339 | AZB634 | GB660 | GB776 | Junhai1 | CEG | |
| FASTA Files | |||||||||||||
| * Predicted coding sequences | 71,549 | 74,094 | 71,963 | 76,046 | 71,312 | 76,012 | 72,247 | 72,870 | 72,281 | 74,527 | 75,774 | 75,755 | |
| * Predicted protein sequences | 71,549 | 74,094 | 71,963 | 76,046 | 71,312 | 76,012 | 72,247 | 72,870 | 72,281 | 74,527 | 75,774 | 75,755 | |
| GFF3 | EXCEL | TXT Files | |||||||||||||
| * Predicted gene with exon alignments | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| Analysis - by CottonGen Team | GB249 | AZB51 | AZB375 | Yuma | AZK101 | Giza7 | AZB339 | AZB634 | GB660 | GB776 | Junhai1 | CEG | |
| GFF3 | EXCEL | TXT files | |||||||||||||
| * Functional | |||||||||||||
| - GO assignments from InterProScan | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - IPR assignments from InterProScan | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - Genes in KEGG Pathways | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - Genes mapped to KEGG orthologs | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| * Marker Alignments | |||||||||||||
| - CottonGen RFLP-RAD markers (11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - CottonGen SSR markers (11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - CottonGen SNP markers (11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - CottonGen InDel markers (11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| * Protein Homologies | |||||||||||||
| - Arabidopsis thaliana Araport11 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - NCBI nr (v. m/yy = 9/21) | |||||||||||||
| - Uniprot swissprot(v. 9/21) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - Uniprot trembl (v. 9/21) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| * Unigene & Transcript Alignments | |||||||||||||
| - G. arboreum CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - G. barbadense CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - G. hirsutum CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - G. raimondii CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |