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Assembly - by genome sequencing project
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Annotation - by genome sequencing project
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| Sequencing Institute and Genome | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Assembly- by genome sequencing project | 379_HAU.1 | 379_HAU.2 | 379_HGS | H7124_ZJU | P90_HEAU | M210936_HAUnew | AD3_HGS | AD3_HAU | AD4_JGI | AD5_HGS | AD6_CRI | AD7_CRI |
| FASTA Files | ||||||||||||
| * Chromosomes + Scaffolds | 26+17,434 | 26+3,006 | 26+4748 | 26+11,324 | 26+283 | 26+656 | 26+293 | 26+888 | 26+2,147 | 26+308 | 26+134 | 26+215 |
| GFF3 | EXCEL | TXT Files | ||||||||||||
| * Chromosomes + Scaffolds | ||||||||||||
| Annotation - by genome sequencing project | 379_HAU.1 | 379_HAU.2 | 379_HGS | H7124_ZJU | P90_HEAU | M210936_HAUnew | AD3_HGS | AD3_HAU | AD4_JGI | AD5_HGS | AD6_CRI | AD7_CRI |
| FASTA Files | ||||||||||||
| * Predicted coding sequences | 109,918 | 109,778 | 108,363 | 75,071 | 79,613 | 75,609 | 112,713 | 72,648 | 106,487 | 97,407 | 74,178 | 74,970 |
| * Predicted protein sequences | 109,918 | 109,778 | 108,363 | 75,071 | 79,613 | 75,609 | 112,713 | 72,648 | 106,487 | 97,407 | 74,178 | 74,970 |
| * Predicted gene sequences | 80,876 | |||||||||||
| GFF3 | EXCEL | TXT Files | ||||||||||||
| * Predicted gene alignments | FTP | FTP | FTP | |||||||||
| * Predicted gene with exon alignments | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |||
| Analysis - by CottonGen Team | 379_HAU.1 | 379_HAU.2 | 379_HGS | H7124_ZJU | P90_HEAU | M210936_HAUnew | AD3_HGS | AD3_HAU | AD4_JGI | AD5_HGS | AD6_CRI | AD7_CRI |
| GFF3 | EXCEL | TXT files | ||||||||||||
| * Functional | ||||||||||||
| - GO assignments from InterProScan | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - IPR assignments from InterProScan | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - Genes in KEGG Pathways | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - Genes mapped to KEGG orthologs | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| * Marker Alignments | ||||||||||||
| - CottonGen RFLP-RAD markers (11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - CottonGen SSR markers (11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - CottonGen SNP markers (11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - CottonGen InDel markers (11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| * Protein Homologies | ||||||||||||
| - Arabidopsis thaliana Araport11 | FTP | FTP(tair10) | FTP | FTP(tair10) | FTP | FTP | FTP | FTP(tair10) | FTP | FTP | FTP | |
| - NCBI nr (v. m/yy = 9/21)new | FTP(5/18) | FTP(5/18) | FTP(5/18) | FTP(5/18) | FTP | FTP(5/18) | FTP | FTP(5/18) | FTP(5/18) | FTP | FTP | |
| - Uniprot swissprot(v. 9/21)new | FTP(1/19) | FTP(4/18) | FTP(1/19) | FTP(1/19) | FTP | FTP(1/19) | FTP | FTP(1/19) | FTP(1/19) | FTP | FTP | |
| - Uniprot trembl (v. 9/21)new | FTP(1/19) | FTP(4/18) | FTP(1/19) | FTP(1/19) | FTP | FTP(1/19) | FTP | FTP(1/19) | FTP(1/19) | FTP | FTP | |
| * Unigene & Transcript Alignments | ||||||||||||
| - G. arboreum CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - G. barbadense CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - G. hirsutum CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |
| - G. raimondii CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | |