Download AD2 (G. barbadense) Genome Data

Table Contents (Click to view)
  Sequencing Institute and Genome
Assembly- by genome sequencing project 3-79_HAU v1 3-79_HAU v2 H7124_ZJU v1.1new      
FASTA Files            
     * Chromosomes + Scaffolds 26+17,434 26+3,006 26+11,324      
GFF3 | EXCEL | TXT  Files            
     * Chromosomes + Scaffolds            
Annotation - by genome sequencing project 3-79_HAU v1 3-79_HAU v2 H7124_ZJU v1.1new      
FASTA Files            
    * Predicted coding sequences 109,918 109,778 75,071      
    * Predicted protein sequences 109,918 109,778 75,071      
    * Predicted gene sequences 80,876          
GFF3 | EXCEL | TXT  Files            
    * Predicted gene alignments FTP FTP FTP      
    * Predicted gene with exon alignments            
Annotation - by CottonGen Team 3-79_HAU v1 3-79_HAU v2 H7124_ZJU v1.1new      
GFF3 | EXCEL | TXT  files            
    * Functional            
          - GO assignments from InterProScan FTP FTP FTP      
          - IPR assignments from InterProScan FTP FTP FTP      
          - Genes in KEGG Pathways FTP FTP FTP      
          - Genes mapped to KEGG orthologs FTP FTP FTP      
    * Marker Alignments updated 7/19            
          - CottonGen RFLP-RAD markers (11/18) FTP FTP FTP      
          - CottonGen SSR markers (11/18) FTP FTP FTP      
          - CottonGen SNP markers (11/18) FTP FTP FTP      
          - CottonGen InDel markers (11/18) FTP   FTP      
    * Protein Homologies updated 7/19            
          - Arabidopsis thaliana Araport11 FTP FTP(tair10) FTP(tair10)      
          - NCBI nr (download m/yy) FTP(1/19) FTP(5/18) FTP(5/18)      
          - Uniprot swissprot (download m/yy) FTP(1/19) FTP(4/18) FTP(1/19)      
          - Uniprot trembl (download m/yy) FTP(1/19) FTP(4/18) FTP(1/19)      
    * Unigene & Transcript Alignments             
          - G. arboreum CottonGen RefTrans v1 FTP FTP FTP      
          - G. barbadense CottonGen RefTrans v1 FTP FTP FTP      
          - G. hirsutum CottonGen RefTrans v1 FTP FTP FTP      
          - G. raimondii CottonGen RefTrans v1 FTP FTP FTP