Download G. barbadense (AD2) and other tetraploid Genome Data

Table Contents (Click to view)
  Sequencing Institute and Genome
Assembly- by genome sequencing project 3-79_HAU.1 3-79_HAU.2 3-79_HGS new H7124_ZJU AD3_HGS new AD4_JGI new AD5_HGS new  
FASTA Files                
     * Chromosomes + Scaffolds 26+17,434 26+3,006 26+4748 26+11,324 26+293 26+2,147 26+308  
GFF3 | EXCEL | TXT  Files                
     * Chromosomes + Scaffolds                
Annotation - by genome sequencing project 3-79_HAU v1 3-79_HAU v2 3-79_HGS new H7124_ZJU AD3_HGS new AD4_JGI new AD5_HGS new  
FASTA Files                
    * Predicted coding sequences 109,918 109,778 108,363 75,071 112,713 106,487 97,407  
    * Predicted protein sequences 109,918 109,778 108,363 75,071 112,713 106,487 97,407  
    * Predicted gene sequences 80,876              
GFF3 | EXCEL | TXT  Files                
    * Predicted gene alignments FTP FTP   FTP        
    * Predicted gene with exon alignments     FTP   FTP FTP FTP  
Analysis - by CottonGen Team 3-79_HAU v1 3-79_HAU v2 3-79_HGS new H7124_ZJU AD3_HGS new AD4_JGI new AD5_HGS new  
GFF3 | EXCEL | TXT  files                
    * Functional                
          - GO assignments from InterProScan FTP FTP FTP FTP FTP FTP FTP  
          - IPR assignments from InterProScan FTP FTP FTP FTP FTP FTP FTP  
          - Genes in KEGG Pathways FTP FTP FTP FTP FTP FTP FTP  
          - Genes mapped to KEGG orthologs FTP FTP FTP FTP FTP FTP FTP  
    * Marker Alignments                
          - CottonGen RFLP-RAD markers (11/18) FTP FTP FTP FTP FTP FTP FTP  
          - CottonGen SSR markers (11/18) FTP FTP FTP FTP FTP FTP FTP  
          - CottonGen SNP markers (11/18) FTP FTP FTP FTP FTP FTP FTP  
          - CottonGen InDel markers (11/18) FTP   FTP FTP FTP FTP FTP  
    * Protein Homologies                
          - Arabidopsis thaliana Araport11 FTP FTP(tair10) FTP FTP(tair10) FTP FTP(tair10) FTP  
          - NCBI nr (v. m/yy = 5/18) FTP FTP FTP FTP FTP FTP FTP  
          - Uniprot swissprot (v. 1/19) FTP FTP(4/18) FTP FTP FTP FTP FTP  
          - Uniprot trembl (v. 1/19) FTP FTP(4/18) FTP FTP FTP FTP FTP  
    * Unigene & Transcript Alignments                 
          - G. arboreum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP  
          - G. barbadense CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP  
          - G. hirsutum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP  
          - G. raimondii CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP FTP