Download CottonGen Marker Data

Marker Sequences (fasta format)

• Array
  • TAMU CottonSNP63K (69,997)
  • NAU CottonSNP80K (77,774)
     
• RFLP and RAD
  • RFLP (3,451) and RAD (3,984) sequences

• SSR - 'Cleaned sequences' = CottonGen Team identified true amplicon sequences (based on the original marker primers and sequences)
  • All CottonGen cleaned SSR marker sequences (72,339) - last update 2018-11-28
  • All SSR markers devloped before 2012 - cleaned version (19,369)

• SNP and InDel
  • All SNP marker sequences (442,404) - last update 2018-11-28
  • All InDel marker sequences (405) - last update 2018-11-28
  • NAU SNP (80K) marker sequences (77,774)
  • UCD SNP marker sequences (999)
  • UCD InDel marker sequences (279)
  • BYU SNP sequences (39,862)
  • CIR SNP Sequences (35,265)
  • CSIRO SNP Sequences (40,400)
  • NBRI SNP Sequences (66,230)

Marker Primers and Marker Source Information

• NAU CottonSNP80K array (77,774) - xlsx
• TAMU CottonSNP63K array (69,997)  - xlsx
• CottonGen SSR Primers no redundant (78340) - txt
• CottonGen SSR Primers no redundant (78340) - xlsx
• All markers developed before 2012 (DArT, InDel, IT-ISJ, RAPD, REMAP, SNP, SRAP, SSR) information and primers (21334)