Diploid Genomes Except A and D

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  Sequencing Institute and Genome
Assembly- by genome sequencing project F1_NSFnew G2_CRI kirkii_ISU
FASTA Files      
     * Chromosomes + Scaffolds 13 13+551 12
GFF3 | EXCEL | TXT  Files      
     * Chromosomes + Scaffolds      
Annotation - by genome sequencing project F1_NSFnew G2_CRI kirkii_ISU
FASTA Files      
    * Predicted coding sequences 40,181 38,281 36,680
    * Predicted protein sequences 40,181 38,281 36,680
    * Predicted gene sequences   38,281  
GFF3 | EXCEL | TXT  Files      
    * Predicted gene alignments      
    * Predicted gene with exon alignments FTP FTP FTP
Annotation - by CottonGen Team F1_NSFnew G2_CRI kirkii_ISU
GFF3 | EXCEL | TXT  files      
    * Functional      
          - GO assignments from InterProScan FTP FTP FTP
          - IPR assignments from InterProScan FTP FTP FTP
          - Genes in KEGG Pathways FTP FTP FTP
          - Genes mapped to KEGG orthologs FTP FTP FTP
    * Marker Alignments      
          - CottonGen RFLP-RAD markers (v. 11/18) FTP FTP FTP
          - CottonGen SSR markers (v.11/18) FTP FTP FTP
          - CottonGen SNP markers (v. 11/18) FTP FTP FTP
          - CottonGen InDel markers (v.11/18) FTP FTP FTP
    * Protein Homologies      
          - Arabidopsis thaliana Araport11 FTP FTP(tair10) FTP(tair10)
          - NCBI nr-all (v. m/yy = 5/18) FTP FTP FTP(
          - Uniprot swissprot-all (v.1/19) FTP FTP FTP
          - Uniprot trembl-all (v.1/19) FTP FTP FTP
    * Unigene & Transcript Alignments       
          - G. arboreum CottonGen RefTrans v1 FTP FTP FTP
          - G. barbadense CottonGen RefTrans v1 FTP FTP FTP
          - G. hirsutum CottonGen RefTrans v1 FTP FTP FTP
          - G. raimondii CottonGen RefTrans v1 FTP FTP FTP