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Assembly - by genome sequencing project (GSP)
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Annotation - by genome sequencing project
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| Sequencing Institute and Genome | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Assembly- by GSP | B1_NSF | B1_JAAS | B1_HAUnew | C1_HAUnew | E1_NSF | E1_ZSTU | E1_HAUnew | F1_NSF | F1_HAUnew | G1_ZJU | G1_HAUnew | G2_CRI | K2_HAU | ||
| FASTA Files | |||||||||||||||
| *Chromosome + Scaffolds | 13+55 | 13+351 | 13+53 | 13+122 | 13 | 13+114 | 13+33 | 13 | 13+19 | 13+432 | 13+20 | 13+551 | 13+2387 | ||
| GFF3 | EXCEL | TXT Files | |||||||||||||||
| *Chromosome + Scaffolds | |||||||||||||||
| Assembly- by GSP | B1_NSF | B1_JAAS | B1_HAUnew | C1_HAUnew | E1_NSF | E1_ZSTU | E1_HAUnew | F1_NSF | F1_HAUnew | G1_ZJU | G1_HAUnew | G2_CRI | K2_HAU | ||
| FASTA Files | |||||||||||||||
| * Predicted coding sequences | 37,016 | 42,752 | 40,845 | 41,308 | 37,889 | 46,215 | 40,321 | 40,181 | 41,633 | 43,790 | 40,857 | 38,281 | 41,590 | ||
| * Predicted protein sequences | 37,016 | 42,752 | 40,845 | 41,308 | 37,889 | 46,215 | 40,321 | 40,181 | 41,633 | 43,790 | 40,857 | 38,281 | 41,590 | ||
| * Predicted gene sequences | 38,281 | ||||||||||||||
| GFF3 | EXCEL | TXT Files | |||||||||||||||
| * Predicted gene alignments | |||||||||||||||
| * Predicted gene w/ exon align. | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| Assembly- by GSP | B1_NSF | B1_JAAS | B1_HAUnew | C1_HAUnew | E1_NSF | E1_ZSTU | E1_HAUnew | F1_NSF | F1_HAUnew | G1_ZJU | G1_HAUnew | G2_CRI | K2_HAU | ||
| GFF3 | EXCEL | TXT files | |||||||||||||||
| * Functional | |||||||||||||||
| - GO assignments from InterProScan | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - IPR assignments from InterProScan | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - Genes in KEGG Pathways | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - Genes mapped to KEGG orthologs | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| * Marker Alignments | |||||||||||||||
| -CottonGen RFLP/RAD markers (v11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - CottonGen SSR markers (v11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - CottonGen SNP markers (v11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - CottonGen InDel markers (v11/18) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| * Protein Homologies | |||||||||||||||
| - Arabidopsis thaliana Araport11 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP(tair10) | FTP | ||
| - NCBI nr-all (v. m/yy = 9/21) | FTP | FTP | FTP | FTP | FTP(5/18) | FTP | FTP(5/18) | FTP | |||||||
| - Uniprot swissprot-all (v.9/21) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP(1/19) | FTP | FTP | FTP | FTP(1/19) | FTP | ||
| - Uniprot trembl-all (v.9/21) | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP(1/19) | FTP | FTP | FTP | FTP(1/19) | FTP | ||
| * Unigene&Transcript Alignments | |||||||||||||||
| - G. arboreum CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - G. barbadense CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - G. hirsutum CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||
| - G. raimondii CottonGen RefTrans v1 | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | FTP | ||