Diploid Genomes Except A and D

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  Sequencing Institute and Genome
Assembly- by genome sequencing project B1_NSF E1_NSF F1_NSF G2_CRI K12_HAU kirkii_ISU
FASTA Files            
     * Chromosomes + Scaffolds 13+55 13 13 13+551 13+2387 12
GFF3 | EXCEL | TXT  Files            
     * Chromosomes + Scaffolds            
Annotation - by genome sequencing project B1_NSF E1_NSF F1_NSF G2_CRI K12_HAU kirkii_ISU
FASTA Files            
    * Predicted coding sequences 37,016 37,889 40,181 38,281 41,590 36,680
    * Predicted protein sequences 37,016 37,889 40,181 38,281 41,590 36,680
    * Predicted gene sequences       38,281    
GFF3 | EXCEL | TXT  Files            
    * Predicted gene alignments            
    * Predicted gene with exon alignments FTP FTP FTP FTP FTP FTP
Annotation - by CottonGen Team B1_NSFnew E1_NSFnew F1_NSF G2_CRI K12_HAU kirkii_ISU
GFF3 | EXCEL | TXT  files            
    * Functional            
          - GO assignments from InterProScan FTP FTP FTP FTP FTP FTP
          - IPR assignments from InterProScan FTP FTP FTP FTP FTP FTP
          - Genes in KEGG Pathways FTP FTP FTP FTP FTP FTP
          - Genes mapped to KEGG orthologs FTP FTP FTP FTP FTP FTP
    * Marker Alignments            
          - CottonGen RFLP-RAD markers (v. 11/18) FTP FTP FTP FTP FTP FTP
          - CottonGen SSR markers (v.11/18) FTP FTP FTP FTP FTP FTP
          - CottonGen SNP markers (v. 11/18) FTP FTP FTP FTP FTP FTP
          - CottonGen InDel markers (v.11/18) FTP FTP FTP FTP FTP FTP
    * Protein Homologies            
          - Arabidopsis thaliana Araport11 FTP FTP FTP FTP(tair10) FTP FTP(tair10)
          - NCBI nr-all (v. m/yy = 9/21) FTP FTP FTP(5/18) FTP(5/18) FTP FTP(5/18)
          - Uniprot swissprot-all (v.9/21) FTP FTP FTP(1/19) FTP(1/19) FTP FTP(1/19)
          - Uniprot trembl-all (v.9/21) FTP FTP FTP(1/19) FTP(1/19) FTP FTP(1/19)
    * Unigene & Transcript Alignments             
          - G. arboreum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP
          - G. barbadense CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP
          - G. hirsutum CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP
          - G. raimondii CottonGen RefTrans v1 FTP FTP FTP FTP FTP FTP