Prema x 86-1, RIL (2015)

Map Overview


Name	Prema x 86-1, RIL (2015)
Species	Gossypium hirsutum
Map type	genetic
Population type	RIL
Population size	179
Genome group	AD
Map unit	cM
Maternal parent	Acala Prema
Paternal parent	China 86-1 (CN-ZM-01746)
Population size	179
Number of loci	4153
Number of QTL	22
Number of linkage groups	103
Publication	[view all]
Contact	Zhang, Tian-Zhen

Map Loci

This map contains 4,153 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU2083	NAU2083	marker_locus	0 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU2092	NAU2092	marker_locus	0 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU4045	nau4045	marker_locus	4.72 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU4044	NAU4044	marker_locus	4.72 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU_RAD_A01_2831119	A01_2831119	marker_locus	9.37 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU_RAD_A01_3948650	A01_3948650	marker_locus	24.13 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU_RAD_A01_4435928	A01_4435928	marker_locus	24.96 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU_RAD_A01_4828004	A01_4828004	marker_locus	26.34 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU_RAD_A01_4832511	A01_4832511	marker_locus	26.8 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.1	NAU_RAD_A01_5641297	A01_5641297	marker_locus	28.55 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_4868522	A01_4868522	marker_locus	0 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_5208768	A01_5208768	marker_locus	0.64 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_5209537	A01_5209537	marker_locus	2.45 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_5221133	A01_5221133	marker_locus	3.3 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_5236287	A01_5236287	marker_locus	4.12 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_5280776	A01_5280776	marker_locus	4.96 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_5314073	A01_5314073	marker_locus	6.74 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_5317464	A01_5317464	marker_locus	7.43 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_5339843	A01_5339843	marker_locus	8.03 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_6233422	A01_6233422	marker_locus	8.59 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_6362386	A01_6362386	marker_locus	9.93 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.2	NAU_RAD_A01_6382864	A01_6382864	marker_locus	10.93 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.3	NAU_RAD_A01_14435469	A01_14435469	marker_locus	0 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.3	NAU_RAD_A01_14611190	A01_14611190	marker_locus	0.26 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.3	NAU_RAD_A01_14869703	A01_14869703	marker_locus	0.81 cM

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Map QTL

This map contains 22 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Prema x 86-1, RIL (2015).P8-RIL_chr05.1	qFS.P8-RIL_ch05-1.akasu10	QTL	16.73 cM	17.81 cM	-
Prema x 86-1, RIL (2015).P8-RIL_chr05.1	qFS.P8-RIL_ch05-1.dafeng10	QTL	13.34 cM	14.91 cM	14.21 cM
Prema x 86-1, RIL (2015).P8-RIL_chr05.1	qFS.P8-RIL_ch05-1.shz09	QTL	10.67 cM	11.57 cM	10.71 cM
Prema x 86-1, RIL (2015).P8-RIL_chr07.3	qFS.P8-RIL_ch07-3.jp09	QTL	41.17 cM	41.31 cM	41.21 cM
Prema x 86-1, RIL (2015).P8-RIL_chr07.3	qFS.P8-RIL_ch07-3.shz09	QTL	41.17 cM	41.31 cM	-
Prema x 86-1, RIL (2015).P8-RIL_chr07.3	qFS.P8-RIL_ch07-3.shz11	QTL	41.17 cM	41.99 cM	41.21 cM
Prema x 86-1, RIL (2015).P8-RIL_chr09.4	qFS.P8-RIL_ch09-4.akasu10	QTL	2.59 cM	3.95 cM	2.61 cM
Prema x 86-1, RIL (2015).P8-RIL_chr09.4	qFS.P8-RIL_ch09-4.dafeng10	QTL	2.59 cM	4.88 cM	2.61 cM
Prema x 86-1, RIL (2015).P8-RIL_chr09.4	qFS.P8-RIL_ch09-4.shz11	QTL	2.59 cM	3.95 cM	2.61 cM
Prema x 86-1, RIL (2015).P8-RIL_chr17.1	qFS.P8-RIL_ch17-1.akasu10	QTL	66.72 cM	67.48 cM	67.21 cM
Prema x 86-1, RIL (2015).P8-RIL_chr17.1	qFS.P8-RIL_ch17-1.hn09	QTL	70.45 cM	72.02 cM	71.21 cM
Prema x 86-1, RIL (2015).P8-RIL_chr17.1	qFS.P8-RIL_ch17-1.jp09	QTL	66.72 cM	67.48 cM	67.21 cM
Prema x 86-1, RIL (2015).P8-RIL_chr17.1	qFS.P8-RIL_ch17-1.shz11	QTL	66.65 cM	69.24 cM	66.71 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.3	qVWR.P8-RIL_ch01-3.GH-vd8	QTL	24.03 cM	30.99 cM	24.61 cM
Prema x 86-1, RIL (2015).P8-RIL_chr01.3	qVWR.P8-RIL_ch01-3.shz10	QTL	24.61 cM	30.19 cM	25.81 cM
Prema x 86-1, RIL (2015).P8-RIL_chr06.1	qVWR.P8-RIL_ch06-1.GH-vd8	QTL	1.41 cM	5.43 cM	3.71 cM
Prema x 86-1, RIL (2015).P8-RIL_chr09.4	qVWR.P8-RIL_ch09-4.GH-vd8	QTL	2.59 cM	3.95 cM	2.61 cM
Prema x 86-1, RIL (2015).P8-RIL_chr11.3	qVWR.P8-RIL_ch11-3.shz11	QTL	23.49 cM	23.7 cM	23.51 cM
Prema x 86-1, RIL (2015).P8-RIL_chr14.3	qVWR.P8-RIL_ch14-3.shz11	QTL	57.96 cM	59.2 cM	58.51 cM
Prema x 86-1, RIL (2015).P8-RIL_chr23.1	qVWR.P8-RIL_ch23-1.GH-vd8	QTL	2.89 cM	4.36 cM	3.91 cM
Prema x 86-1, RIL (2015).P8-RIL_chr23.1	qVWR.P8-RIL_ch23-1.shz10	QTL	2.89 cM	4.36 cM	3.91 cM
Prema x 86-1, RIL (2015).P8-RIL_chr23.1	qVWR.P8-RIL_ch23-1.shz11	QTL	2.89 cM	4.36 cM	3.91 cM

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Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Agricultural University of Nanjing
Address:	Weigang 1#, Nanjing, Jiangsu 210095
Country:	China
Email:	cotton@njau.edu.cn
Phone:	+86 25 84395307
Fax:	+86 25 84395307
Keywords:	Genetics and Breeding
Last update:	18-Mar-2011

Stock

Name

Type

Details

Prema x 86-1, RIL

population

Secondary id:	cdbpop_000104
Description:	genetic mapping
Origin detail:	Nanjing, China
Population size:	179
Alias:	P8-RIL
Pedigree:	Acala Prema / China 86-1

Publication


Year	Publications
2015	Wang Y, Ning Z, Hu Y, Chen J, Zhao R, Chen H, Ai N, Guo W, Zhang T. Molecular mapping of restriction-site associated DNA markers in allotetraploid upland cotton. PloS one. 2015; 10(4):e0124781.

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Prema x 86-1, RIL (2015)