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Map Overview
Name | CCRI-35 x NH, F2:3 (2018) |
Species | Gossypium hirsutum
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Analysis method | composite interval mapping |
Software | JoinMap 4.1 |
Map type | genetic |
Population type | F2:3 |
Population size | 277 |
Genome group | AD |
Map unit | cM |
Maternal parent | Zhong Mian Suo 35 |
Paternal parent | Nandan Badi Big Flower |
Population size | 277 |
Number of loci | 5178 |
Number of QTL | 263 |
Number of linkage groups | 26 |
Publication | [view all] |
Contact | Du, Xiong-Ming
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Map Loci
This map contains 5,178 marker loci:
Linkage Group | Marker Name | Locus Name | Type | Position |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa21-m_A01 | MulMa21-m_A01 | marker_locus | 0 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa20_A01 | MulMa20_A01 | marker_locus | 0.55 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa23-m_A01 | MulMa23-m_A01 | marker_locus | 0.64 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa22-m_A01 | MulMa22-m_A01 | marker_locus | 0.67 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa18-m_A01 | MulMa18-m_A01 | marker_locus | 0.98 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa19-m_A01 | MulMa19-m_A01 | marker_locus | 1.13 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa16_A01 | MulMa16_A01 | marker_locus | 1.41 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa15-m_A01 | MulMa15-m_A01 | marker_locus | 1.41 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_MulMa17_A01 | MulMa17_A01 | marker_locus | 1.41 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk378_A01 | mk378_A01 | marker_locus | 6.27 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk379_A01 | mk379_A01 | marker_locus | 6.38 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk530_A01 | mk530_A01 | marker_locus | 14.31 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk611_A01 | mk611_A01 | marker_locus | 14.58 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk729_A01 | mk729_A01 | marker_locus | 15.04 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk732_A01 | mk732_A01 | marker_locus | 15.28 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk733_A01 | mk733_A01 | marker_locus | 15.28 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk734_A01 | mk734_A01 | marker_locus | 15.28 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk602_A01 | mk602_A01 | marker_locus | 15.49 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk737_A01 | mk737_A01 | marker_locus | 15.88 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk736_A01 | mk736_A01 | marker_locus | 16.01 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk735_A01 | mk735_A01 | marker_locus | 16.11 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk539_A01 | mk539_A01 | marker_locus | 16.58 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk538_A01 | mk538_A01 | marker_locus | 16.58 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk537_A01 | mk537_A01 | marker_locus | 16.58 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | CCRI_SNP_mk740_A01 | mk740_A01 | marker_locus | 16.84 cM |
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Map QTL
This map contains 263 QTL:
Linkage Group | Name | Type | Start | Stop | Peak |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | qCB.CN-F2:3_ch01.ay14.1 | QTL | 80.93 cM | 84 cM | 82.91 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | qCRD.CN-F2:3_ch01.ay14.1 | QTL | 107.42 cM | 108.03 cM | 107.61 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | qCRD.CN-F2:3_ch01.ay14.2 | QTL | 124.61 cM | 124.73 cM | 124.71 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | qCRD.CN-F2:3_ch01.ay14.3 | QTL | 132.16 cM | 134.67 cM | 133.21 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | qCB.CN-F2:3_ch01.ay14.2 | QTL | 136.2 cM | 144.71 cM | 138.21 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr01 | qFL.CN-F2:3_ch01.ay15 | QTL | 145.26 cM | 145.82 cM | 145.31 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qFS.CN-F2:3_ch02.ay15 | QTL | 0 cM | 17.85 cM | 5.01 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qFSCI.CN-F2:3_ch02.ay14-16.1 | QTL | 0 cM | 17.85 cM | 1.01 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qFSCI.CN-F2:3_ch02.ay15 | QTL | 0 cM | 17.85 cM | 1.01 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qFSCI.CN-F2:3_ch02.ay16 | QTL | 0 cM | 17.85 cM | 1.01 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qFU.CN-F2:3_ch02.ay16 | QTL | 0 cM | 17.85 cM | 0.01 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qFEL.CN-F2:3_ch02.ay15 | QTL | 45.8 cM | 47.57 cM | 45.81 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qMIC.CN-F2:3_ch02.ay14.1 | QTL | 133.04 cM | 133.29 cM | 133.11 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qMIC.CN-F2:3_ch02.ay14-16.1 | QTL | 133.04 cM | 133.29 cM | 133.11 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qMIC.CN-F2:3_ch02.ay14-16.2 | QTL | 138.04 cM | 138.32 cM | 138.31 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qMIC.CN-F2:3_ch02.ay14.2 | QTL | 138.38 cM | 138.38 cM | 138.31 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qMIC.CN-F2:3_ch02.ay14.3 | QTL | 159.05 cM | 164.07 cM | 163.11 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qMIC.CN-F2:3_ch02.ay14-16.3 | QTL | 159.05 cM | 164.07 cM | 163.11 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qMIC.CN-F2:3_ch02.ay16 | QTL | 164.07 cM | 164.53 cM | 164.11 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qFSCI.CN-F2:3_ch02.ay14-16.2 | QTL | 334.26 cM | 337.05 cM | 336.31 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr02 | qFL.CN-F2:3_ch02.ay14-16 | QTL | 337.05 cM | 337.3 cM | 337.11 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr03 | qFS.CN-F2:3_ch03.ay14-16.1 | QTL | 20.8 cM | 20.82 cM | 20.81 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr03 | qFS.CN-F2:3_ch03.ay16 | QTL | 23.74 cM | 24.74 cM | 23.81 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr03 | qFS.CN-F2:3_ch03.ay14-16.2 | QTL | 27.39 cM | 34.67 cM | 29.41 cM |
CCRI-35 x NH, F2:3 (2018).CN-F2:3_chr03 | qFS.CN-F2:3_ch03.ay15 | QTL | 41.75 cM | 47.75 cM | 41.81 cM |
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Stock
Name | Type | Details |
CCRI-35 x NH, F2:3 | population | Secondary id: | cdbpop_000156 | Origin detail: | China | Population size: | 277 | Cultivar: | 3 | Pedigree: | Zhong Mian Suo 35 / Nandan Badi Big Flower |
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