Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr10	m12e12-780	m12e12-780	marker_locus	117 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m11e12-680	m11e12-680	marker_locus	117 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL3895	BNL3895	marker_locus	119.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m2e1-700	m2e1-700	marker_locus	125.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m12e12-800	m12e12-800	marker_locus	126.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m11e12-700	m11e12-700	marker_locus	126.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m7e7-320	m7e7-320	marker_locus	142.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL2960	BNL2960	marker_locus	142.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m7e7-300	m7e7-300	marker_locus	142.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL3790	BNL3790	marker_locus	149.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL1161	BNL1161b*	marker_locus	156.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m3e2-700	m3e2-700	marker_locus	157.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	TMB0307	TMHA18	marker_locus	160.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	TMB0189	TMHC05a	marker_locus	160.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL2705	BNL2705	marker_locus	160.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m4e3-300	m4e3-300	marker_locus	161.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL1665	BNL1665	marker_locus	161.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m3e2-670	m3e2-670	marker_locus	162.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL1253	BNL1253b	marker_locus	166.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m2e6-750	m2e6-750	marker_locus	169.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m2e17-570	m2e17-570	marker_locus	175.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m4e9-900	m4e9-900*	marker_locus	177.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m14e16-300	m14e16-300	marker_locus	181.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m1e4-700	m1e4-700	marker_locus	182.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m11e3-500	m11e3-500	marker_locus	189.7 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)