Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr10	m4e5-350	m4e5-350	marker_locus	190.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m1e11-800	m1e11-800	marker_locus	191.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	S0458	S458b	marker_locus	192.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m2e9-700	m2e9-700	marker_locus	196.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m1e3-580	m1e3-580	marker_locus	201.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m8e10-820	m8e10-820	marker_locus	209.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m4e2-900	m4e2-900	marker_locus	226.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m12e3-480	m12e3-480	marker_locus	246.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m10e3-630	m10e3-630	marker_locus	255 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m13e6-600	m13e6-600	marker_locus	261.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL0580	BNL580a*	marker_locus	271 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL3431	BNL3431	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL2589	BNL2589*	marker_locus	9.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1034	BNL1034d*	marker_locus	21.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m14e10-600	m14e10-600	marker_locus	37.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m4e8-200	m4e8-200*	marker_locus	47.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1681	BNL1681	marker_locus	59.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL3411	BNL3411	marker_locus	69.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1404	BNL1404	marker_locus	72.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1440	BNL1440b	marker_locus	74.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	TMB0043	TMHA12	marker_locus	85.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	CIR0385	CIR385a	marker_locus	87.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL3935	BNL3935a	marker_locus	87.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL2812	BNL2812*	marker_locus	87.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	CIR0385	CIR385b	marker_locus	90.1 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)