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Marker Overview
| Name | CIR0385 |
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| Alias | CIR385
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| Genbank ID | AJ567312 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ567312
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| Source Type | genomic |
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| Repeat Motif | (AC)4(N)1(CA)6 |
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| PCR Condition | Annealing temperature: 51 |
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| Primer 1 | CIR385_F: TAACCCTTCTTCTCAACAC |
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| Primer 2 | CIR385_R: TAACGAAGCATACAAGGA |
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| Product Length | 123 |
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| Polymorphism | P_ CIR0385 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch11_At.11 | N/A | 53 | CIR385 | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch21_Dt.11 | N/A | 87.9 | CIR385 | View |
| 3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch11_At.11 | N/A | 173.9 | CIR385 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch11_At.11 | N/A | 163.28 | CIR385 | View |
| 5 | Yumian-1 x T586, F2:7 (2008) | AD_ch21_Dt.11 | N/A | 112.3 | CIR385 | View |
| 6 | Yumian-1 x T586, RIL (2006) | AD_ch21_Dt.11 | N/A | 90.2 | CIR385 | View |
| 7 | Yumian-1 x T586, RIL (2015) | AD_ch21_Dt.11 | N/A | 73.9 | CIR385 | View |
| 8 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch11_At.11 | N/A | 87.1 | CIR385a | View |
| 9 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch11_At.11 | N/A | 90.1 | CIR385b | View |
| 10 | AD-genome wide Reference Map (2009) | AD_ch11_At.11 | N/A | 236 | cir0385 | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch21_Dt.11 | N/A | 155 | cir0385 | View |
| 12 | Yumian-1 x T586, RIL (2009) | AD_ch21_Dt.11 | N/A | 110.4 | CIR385/150t(C11) | View |
| 13 | GB713 x Nem-X, F2 (2011) | AD_ch21_Dt.11 | N/A | 93.2 | CIR385_127 | View |
| 14 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch11_At.11 | N/A | 181.8 | CIR385 | View |
Sequence
>CIR0385 ID=CIR0385; Name=CIR0385; organism=Gossypium hirsutum; type=genetic_marker; length=123bp
TAACCCTTCTTCTCAACACACACTCACACACACACATACAAAATAAAGAA
AACTCCTTATCCTATCATGTATCTGTCTTTACACTTCACTTTCTCCATCT
TTAGCTCCTTGTATGCTTCGTTA
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