Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr01	CIR0009	CIR009a	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	CIR0009	CIR009b	marker_locus	1.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	CIR0009	CIR009d	marker_locus	3.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	BNL2440	BNL2440b*	marker_locus	6.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	CIR0199	CIR199b	marker_locus	11.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	CIR0199	CIR199a*	marker_locus	11.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	BNL1693	BNL1693b*	marker_locus	17.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	BNL3888	BNL3888	marker_locus	31.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	m1e13-950	m1e13-950	marker_locus	36.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	BNL3090	BNL3090a	marker_locus	36.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	BNL3580	BNL3580	marker_locus	37.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	CIR0089	CIR089	marker_locus	46.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	BNL2827	BNL2827*	marker_locus	50.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	m2e11-600	m2e11-600	marker_locus	51.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	JESPR0289	JESPR289a*	marker_locus	52.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	S1302	S1302b	marker_locus	54.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	m3e1-550	m3e1-550*	marker_locus	55.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	m11e8-680	m11e8-680	marker_locus	57.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	MGHES0010	MGHES10b	marker_locus	61 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	BNL2921	BNL2921b	marker_locus	66 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	m2e12-620	m2e12-620	marker_locus	68.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr01	BNL2921	BNL2921	marker_locus	69.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr02	JESPR0101	JESPR101	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr02	m10e10-400	m10e10-400*	marker_locus	0.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr02	m14e17-550	m14e17-550	marker_locus	1.5 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr01	qFL.HP-ch1	QTL	37.6 cM	52.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr01	qSI.HP-ch1	QTL	36.2 cM	37.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr05	qLY.HP-ch5.1	QTL	243.2 cM	243.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr05	qLY.HP-ch5.2	QTL	145 cM	150 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr06	qFL.HP-ch6	QTL	86.5 cM	87.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr06	qSI.HP-ch6	QTL	185 cM	196.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr07	qSCY.HP-ch7.1	QTL	94.7 cM	94.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr07	qSCY.HP-ch7.2	QTL	48.6 cM	49.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr07	qSCY.HP-ch7.3	QTL	127.7 cM	146.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr07	qSI.HP-ch7	QTL	20.8 cM	116.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr08/lgA02	qFL.HP-ch8	QTL	82.6 cM	323.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr08/lgA02	qFS.HP-ch8.1	QTL	82.6 cM	323.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr08/lgA02	qFS.HP-ch8.2	QTL	143.8 cM	164.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr08/lgA02	qLI.HP-ch8	QTL	132.8 cM	360.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr08/lgA02	qLY.HP-ch8.1	QTL	132.8 cM	360.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr08/lgA02	qLY.HP-ch8.2	QTL	144.8 cM	220 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr08/lgA02	qMIC.HP-ch8	QTL	164.9 cM	176.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr08/lgA02	qSI.HP-ch8	QTL	82.6 cM	323.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr09	qFL.HP-ch9	QTL	41 cM	51 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr10	qMIC.HP-ch10	QTL	181.7 cM	182.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	qLY.HP-ch11.1	QTL	274.2 cM	275.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	qLY.HP-ch11.2	QTL	227.2 cM	227.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	qMIC.HP-ch11	QTL	186.1 cM	202.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	qSI.HP-ch11	QTL	273.5 cM	274.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qFL.HP-ch14	QTL	99.2 cM	101.7 cM	-

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Handan-208 x Pima-90, F2:3 (2007)