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Marker Overview
| Name | BNL1440 |
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| Alias | MAS-L19
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL1440_orig
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| Source Type | genomic |
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| Repeat Motif | (AG)15 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL1440_F: CCGAAATATACTTGTCATCTAAACG |
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| Primer 2 | BNL1440_R: CCCCCGGACTAATTTTTCAA |
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| Polymorphism | P_ BNL1440 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 45_FISH_GEN-178-1117_fig2.jpg | BAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | 3-79 x NM24016, RIL (2008) | AD_ch06_At.06 | N/A | 0 | BNL1440b | View |
| 2 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch25_Dt.06 | N/A | 63.3 | BNL1440b | View |
| 3 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch11_At.11 | N/A | 74.3 | BNL1440b | View |
| 4 | TM-1 x 3-79, RIL (2012) | AD_ch06_At.06 | N/A | 68.81 | BNL1440b | View |
| 5 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch25_Dt.06 | N/A | 95.2 | BNL1440b | View |
| 6 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch25_Dt.06 | N/A | 84.9 | BNL1440b | View |
| 7 | Palmeri x K-101, F2 (2007) | AD_ch25_Dt.06 | N/A | 84.6 | BNL1440b | View |
| 8 | TM-1 x 3-79, RIL (2014) | AD_ch06_At.06 | N/A | 68.8 | BNL1440b | View |
| 9 | Monsanto SSR Bin Map, (2009) | AD_ch25_Dt.06 | N/A | 61 | BNL1440b | View |
| 10 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch06_At.06 | N/A | 102.9 | BNL1440a | View |
| 11 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch06_At.06 | N/A | 108.1 | BNL1440a | View |
| 12 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch06_At.06 | N/A | 43.9 | BNL1440a | View |
| 13 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch08_At.08 | N/A | 0 | BNL1440a | View |
| 14 | Palmeri x K-101, F2 (2007) | AD_ch05_At.05 | N/A | 89.4 | BNL1440a | View |
| 15 | TM-1 x 3-79, RIL (2012) | AD_ch25_Dt.06 | N/A | 65.31 | BNL1440a | View |
| 16 | TM-1 x 3-79, RIL (2014) | AD_ch25_Dt.06 | N/A | 61.8 | BNL1440a | View |
| 17 | Monsanto SSR Bin Map, (2009) | AD_ch06_At.06 | N/A | 61 | BNL1440a | View |
| 18 | Deltapine x Giza-83, F2 (2008) | AD_chU | N/A | 569.7 | MAS-L19-280 | View |
| 19 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch06_At.06 | N/A | 48.64 | BNL1440 | View |
| 20 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch25_Dt.06 | N/A | 34.18 | BNL1440 | View |
| 21 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch06_At.06 | N/A | 18.53 | BNL1440 | View |
| 22 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A06 | N/A | 5.3 | BNL1440 | View |
| 23 | AD-genome wide Reference Map (2009) | AD_ch11_At.11 | N/A | 220 | BNL1440 | View |
| 24 | AD-genome wide Reference Map (2009) | AD_ch25_Dt.06 | N/A | 91 | BNL1440 | View |
| 25 | AD-genome wide Reference Map (2009) | AD_ch06_At.06 | N/A | 50 | BNL1440 | View |
| 26 | TM-1 x 3-79, RIL (2006) | AD_ch06_At.06 | N/A | 12.5 | BNL1440 | View |
| 27 | Emian-22 x 3-79, BC1 (2011) | AD_ch25_Dt.06 | N/A | 74.99 | BNL1440 | View |
| 28 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch25_Dt.06 | N/A | 69.75 | BNL1440 | View |
| 29 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 103 | BNL1440 | View |
| 30 | Yumian-1 x 7235, RIL (2015) | AD_ch06_At.06 | N/A | 35 | BNL1440 | View |
| 31 | DH962 X Ji Mian 5, F2 (2015) | AD_ch06_At.06 | N/A | 13.85 | BNL1440 | View |
| 32 | 0-153 x sGK9708, RIL (2015) | AD_ch25_Dt.06 | N/A | 51.25 | BNL1440 | View |
| 33 | 0-153 x sGK9708, RIL (2016) | AD_ch25_Dt.06 | N/A | 130.8 | BNL1440 | View |
| 34 | DH962 x Ji Mian 5, RIL (2015) | AD_ch06_At.06 | N/A | 51.3 | BNL1440 | View |
| 35 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch06_At.06 | N/A | 87.2 | BNL1440 | View |
| 36 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch06_At.06 | N/A | 85.9 | BNL1440 | View |
| 37 | 0-153 x sGK9708, RIL (2017) | AD_ch06_At.06 | N/A | 27.32 | BNL1440 | View |
| 38 | Pima S7 x Acala 44, F2.V76 (2005) | AD_ch06_At.06 | N/A | 0 | BNL1440 | View |
| 39 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch06_At.06 | N/A | 113.7 | BNL1440c | View |
| 40 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch06_At.06 | N/A | 130.1 | BNL1440e | View |
| 41 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch08_At.08 | N/A | 17.1 | BNL1440d | View |
| 42 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch25_Dt.06 | N/A | 328.1 | BNL1440f | View |
| 43 | TM-1 x Hai-7124, BC1 (2007) | AD_ch06_At.06 | N/A | 88 | BNL1440-255 | View |
| 44 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch06_At.06 | N/A | 9.3 | BNL1440-255 | View |
| 45 | TM-1 x Hai-7124, BC1 (2008) | AD_ch06_At.06 | N/A | 69.07 | BNL1440-255 | View |
| 46 | TM-1 x Hai-7124, BC1 (2012) | AD_ch06_At.06 | N/A | 67.2 | BNL1440-255 | View |
| 47 | TM-1 x Hai-7124, BC1 (2007) | AD_ch25_Dt.06 | N/A | 109.9 | BNL1440-245 | View |
| 48 | TM-1 x Hai-7124, BC1 (2008) | AD_ch25_Dt.06 | N/A | 30.69 | BNL1440-245 | View |
| 49 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch25_Dt.06 | N/A | 63.3 | BNL1440-245 | View |
| 50 | TM-1 x Hai-7124, BC1 (2012) | AD_ch25_Dt.06 | N/A | 79.8 | BNL1440-245 | View |
| 51 | TM-1 x Hai-7124, BC1 (2005.v0) | AD_ch25_Dt.06 | N/A | 158.1 | BNL1440-452 | View |
| 52 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch06_At.06 | N/A | 49.07 | BNL1440 | View |
| 53 | TM-1 x 3-79, RIL (2012.v3) | AD_ch06_At.06 | N/A | 68.81 | BNL1440b | View |
| 54 | TM-1 x 3-79, RIL (2012.v3) | AD_ch25_Dt.06 | N/A | 61.81 | BNL1440a | View |
| 55 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch06_At.06 | N/A | 119.9 | BNL1440 | View |
Sequence
>BNL1440 ID=BNL1440; Name=BNL1440; organism=Gossypium hirsutum; type=genetic_marker; length=259bp
CCGAAATATACTTGTCATCTAAACGATTAGAGATTTTTCCATCACTAATT
TCAATAAATACCAAATAAATTGTAATACAAAAAATAATTTAAAAAACCTT
AATAAAATTTTAATAATAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGTTGAGAGAGGAATAAAAGTTGAGTGAGAAATTAAAAGGGAATTGAGAG
AGATTTGAGAATGTGAGAAAGAGATGAGTTGAGATTGACTTGAAAAATTA
GTCCGGGGG
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