Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL3779	BNL3779b	marker_locus	26.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	JESPR0195	JESPR195b	marker_locus	37.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	JESPR0230	JESPR230a	marker_locus	41 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL1672	BNL1672a	marker_locus	51 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL3147	BNL3147a	marker_locus	52.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL3031	BNL3031b	marker_locus	56.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL3779	BNL3779a	marker_locus	58.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	TMB0184	TMHF18	marker_locus	59.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	m3e2-430	m3e2-430	marker_locus	61.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	ENV1UBC890-1	Env1UBC890-1	marker_locus	64.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	m3e2-390	m3e2-390	marker_locus	65.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL3410	BNL3410	marker_locus	70.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL2847	BNL2847b	marker_locus	73.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL2847	BNL2847	marker_locus	74.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	m3e4-460	m3e4-460	marker_locus	75.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL1648	BNL1648a	marker_locus	77.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	m3e4-500	m3e4-500	marker_locus	77.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL1648	BNL1648c	marker_locus	77.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL3582	BNL3582	marker_locus	78.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	JESPR0095	JESPR95b	marker_locus	82.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	MGHES0073	MGHES73b	marker_locus	85.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	MGHES0070	MGHES70	marker_locus	91.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	MGHES0073	MGHES73a	marker_locus	91.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	MGHES0002	MGHES2	marker_locus	96.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL4028	BNL4028	marker_locus	102 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)