Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	JESPR0158	JESPR158	marker_locus	90.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL3418	BNL3418	marker_locus	92.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m1e3-730	m1e3-730	marker_locus	115.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	MGHES0016	MGHES16b	marker_locus	150.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	MGHES0016	MGHES16a	marker_locus	152.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1231	BNL1231c	marker_locus	162.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m4e6-750	m4e6-750	marker_locus	178.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m5e4-200	m5e4-200*	marker_locus	182.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m7e11-400	m7e11-400*	marker_locus	186.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m5e17-650	m5e17-650	marker_locus	202.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m1e3-750	m1e3-750	marker_locus	209.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL2632	BNL2632	marker_locus	218.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m3e6-500	m3e6-500	marker_locus	225.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1066	BNL1066	marker_locus	226 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m2e6-30	m2e6-30	marker_locus	227.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m10e8-720	m10e8-720	marker_locus	227.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m13e13-300	m13e13-300	marker_locus	229.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL2805	BNL2805	marker_locus	233.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m7e2-850	m7e2-850*	marker_locus	233.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1408	BNL1408	marker_locus	236.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL4094	BNL4094*	marker_locus	242.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m4e1-570	m4e1-570	marker_locus	243.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	S1280	S1280b	marker_locus	248.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	MGHES0038	MGHES38aa	marker_locus	248.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m8e3-820	m8e3-820	marker_locus	253.3 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)