BNL1231, BNL1231 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1231
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1231_orig
Source Typegenomic
Repeat Motif(AG)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL1231_F: TAATAAAAGGGAAAGGAAAGAGTT
Primer 2BNL1231_R: TATGGCTCTAGAATATTCCCTCG
PolymorphismP_ BNL1231
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL1231_FBNL1231_FGossypium hirsutumprimer
BNL1231_RBNL1231_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
lint indexqLI.HP-ch8Gossypium spp.QTL
lint yieldqLY.HP-ch8.1Gossypium spp.QTL


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber elongationqFEL.MAGIC-19831_ch11.hg13Gossypium spp.QTL
fiber elongationqFEL.MAGIC-19831_ch11.jz15Gossypium spp.QTL
micronaireqMIC.MAGIC-19831_ch11.zk15Gossypium spp.QTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1231BNL1231Gossypium hirsutummarker_locus
BNL1231aBNL1231aGossypium hirsutummarker_locus
BNL1231a*BNL1231a*Gossypium hirsutummarker_locus
BNL1231cBNL1231cGossypium hirsutummarker_locus
BNL1231bBNL1231bGossypium hirsutummarker_locus
BNL1231-185BNL1231-185Gossypium hirsutummarker_locus
BNL-1231BNL-1231Gossypium hirsutummarker_locus
BNL1231bBNL1231b-143.985Gossypium hirsutummarker_locus
BNL1231aBNL1231a-124.06Gossypium hirsutummarker_locus
BNL1231BNL1231-200.8Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1231_origBNL1231_origGossypium hirsutumsequence_feature


Sequence
>BNL1231 ID=BNL1231|Name=BNL1231|organism=Gossypium hirsutum|type=genetic_marker|length=199bp
TAATAAAAGGGAAAGGAAAGAGTTAAAAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAACTAAAACAAGACACACCCAGCGACAGGGTGAGCCAATAGAA
AGACAGAAATAAAACAAAGAAATTATTTGCATGCCTAAAATAGTTACATT
TCGTTGTTAGGTATGTTTTTAGAAAACGAGGGAATATTCTAGAGCCATA
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part(Simian-3 x Sumian-12) x (Zhong-4133 x 8891), 4WC (2008) part.SSZ8-4WC_A11-3N/AAD_chr.1117.3BNL1231
27235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D06-1N/AAD_chr.2511.2BNL1231
3Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr11N/AAD_chr.1130.46BNL1231
4Guazuncho-2 x VH8-4602, BC2 (2005)Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr21/lgD02N/AAD_chr.2110.1BNL1231
5Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c21N/AAD_chr.2128.95BNL1231
6AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr11N/AAD_chr.1112BNL1231
7AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr25N/AAD_chr.253BNL1231
8TM-1 x 3-79, RIL (2006)TM-1 x 3-79, RIL (2006).T3-RIL_chr.11bN/AAD_chr.1133BNL1231
9Zhongmiansuo-12 x 8891, RIL (2007)Zhongmiansuo-12 x 8891, RIL (2007).Z8-RIL_ch11/A11N/AAD_chr.1125.2BNL1231
10AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr21N/AAD_chr.2125BNL1231
11DH962 x Jinmian-6, F2 (2009)DJ-F2_chr11N/AAD_chr.1156.2BNL1231
12DH962 x Jinmian-6, F2 (2009)DJ-F2_chr11/LG12N/AAD_chr.1156.2BNL1231
13NemX x SJ-2, RIL (2005)NS-RIL_chr11/lgA03N/AAD_chr.1121BNL1231
14DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr11N/AAD_chr.1127.92BNL1231
15TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr03N/AAD_chr.0348.9BNL1231
16Emian-22 x 3-79, BC1 (2015)E3-BC1-2015_chr11N/AAD_chr.11200.8BNL1231
17DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr11-1N/AAD_chr.11-145.3BNL1231
18Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr21/lgD02N/AAD_chr.2131.3BNL1231a
19Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr21N/AAD_chr.21150BNL1231a
20Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr11/lgA03N/AAD_chr.1113.1BNL1231a
21TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c21N/AAD_chr.21113.36BNL1231a
22TM-1 x 3-79, RIL (2014)T3-RIL.14_chr21N/AAD_chr.21124.1BNL1231a
23Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr08/lgA02N/AAD_chr.08132.8BNL1231a*
24Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr11/lgA03N/AAD_chr.11162.8BNL1231c
25Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr11/lgA03N/AAD_chr.11315.1BNL1231b
26Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr11N/AAD_chr.11170BNL1231b
27Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr21/lgD02N/AAD_chr.2110.6BNL1231b
28TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c11N/AAD_chr.11140.86BNL1231b
29TM-1 x 3-79, RIL (2014)T3-RIL.14_chr11N/AAD_chr.11144BNL1231b
30TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr11N/AAD_chr.110BNL1231-185
31TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr11/A11N/AAD_chr.110BNL1231-185
32Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgA03.1N/AAD_chr.112.9BNL1231-185
33ST-474 x Auburn 634 RNR, F2 (2007)STA-F2_chr11/lgA03N/AAD_chr.11107.5BNL-1231
34TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.11N/AAD_chr.11143.99BNL1231b
35TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.21N/AAD_chr.21124.06BNL1231a
36MGG-293-793, MAGIC (2018)MAGIC-19831_chr11N/AAD_chr.11200.8BNL1231