Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr14	BNL0891	BNL891a	marker_locus	193 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	m1e5-300	m1e5-300	marker_locus	193.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	BNL0891	BNL891c	marker_locus	193.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	BNL1897	BNL1897	marker_locus	201.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	m5e6-580	m5e6-580*	marker_locus	217.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	m3e1-520	m3e1-520*	marker_locus	225 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	m11e16-680	m11e16-680*	marker_locus	236.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	S1302	S1302c*	marker_locus	241.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	BNL3502	BNL3502	marker_locus	250.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	CIR0246	CIR246a	marker_locus	260.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	TMB0594	TMHJ09	marker_locus	264.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	m11e16-780	m11e16-780	marker_locus	283.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr14	BNL2263	BNL2263*	marker_locus	304.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	CIR0009	CIR009c	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	BNL2440	BNL2440a*	marker_locus	1.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	JESPR0152	JESPR152b*	marker_locus	4.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	BNL1350	BNL1350	marker_locus	10.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	S0290	S290a	marker_locus	21.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	S0434	S434a	marker_locus	28.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	BNL1666	BNL1666b	marker_locus	34.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	BNL2646	BNL2646c	marker_locus	37.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	BNL2646	BNL2646d	marker_locus	39.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	BNL4082	BNL4082b	marker_locus	44.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	CIR0411	CIR411a	marker_locus	51.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr15	CIR0158	CIR158*	marker_locus	65.6 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)