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Marker Overview
| Name | BNL2646 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL2646_orig
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| Source Type | genomic |
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| Repeat Motif | (GA)3+G+A2+(AG)4+(GA)4, (TC)4+(CT)17 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL2646_F: CCCCTTTGATAGATACACATTTTTA |
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| Primer 2 | BNL2646_R: AAAATAAACTACGAAAGAGAAAGAGAA |
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| Polymorphism | P_ BNL2646 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
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| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Acala-44 x Pima S-7, F2 (2004) | AD_ch09_At.09 | N/A | 0 | BNL2646 | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch15_Dt.01 | N/A | 91.2 | BNL2646 | View |
| 3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch15_Dt.01 | N/A | 91 | BNL2646 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch15_Dt.01 | N/A | 55.06 | BNL2646 | View |
| 5 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch07_At.07 | N/A | 120.6 | BNL2646 | View |
| 6 | TM-1 x 3-79, RIL (2006) | AD_ch15_Dt.01 | N/A | 16.2 | BNL2646 | View |
| 7 | TM-1 x 3-79, RIL (2012) | AD_ch15_Dt.01 | N/A | 65.4 | BNL2646 | View |
| 8 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch15_Dt.01 | N/A | 48.8 | BNL2646 | View |
| 9 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 111 | BNL2646 | View |
| 10 | TM-1 x 3-79, RIL (2014) | AD_ch15_Dt.01 | N/A | 54.5 | BNL2646 | View |
| 11 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch15_Dt.01 | N/A | 79.1 | BNL2646 | View |
| 12 | SG 747 x Giza 75, BIL (2013) | AD_ch15_Dt.01 | N/A | 65.2 | BNL2646 | View |
| 13 | CCRI-36 x G2005, RIL (2016) | AD_ch15_Dt.01 | N/A | 126.14 | BNL2646 | View |
| 14 | Monsanto SSR Bin Map, (2009) | AD_ch15_Dt.01 | N/A | 41 | BNL2646 | View |
| 15 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch07_At.07 | N/A | 116.6 | BNL2646b | View |
| 16 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 109.3 | BNL2646b | View |
| 17 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch26_Dt.12 | N/A | 45.7 | BNL2646b | View |
| 18 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch15_Dt.01 | N/A | 37.3 | BNL2646c | View |
| 19 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch15_Dt.01 | N/A | 39.7 | BNL2646d | View |
| 20 | TM-1 x Hai-7124, BC1 (2007) | AD_ch15_Dt.01 | N/A | 76.1 | BNL2646-125 | View |
| 21 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch15_Dt.01 | N/A | 7.8 | BNL2646-125 | View |
| 22 | TM-1 x Hai-7124, BC1 (2008) | AD_ch15_Dt.01 | N/A | 74.82 | BNL2646-125 | View |
| 23 | TM-1 x Hai-7124, BC1 (2012) | AD_ch15_Dt.01 | N/A | 50.1 | BNL2646-125 | View |
| 24 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch15_Dt.01 | N/A | 61 | BNL2646a | View |
| 25 | TM-1 x 3-79, RIL (2012.v3) | AD_ch15_Dt.01 | N/A | 54.49 | BNL2646 | View |
| 26 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch15_Dt.01 | N/A | 146.2 | BNL2646 | View |
Sequence
>BNL2646 ID=BNL2646; Name=BNL2646; organism=Gossypium hirsutum; type=genetic_marker; length=143bp
CCCCTTTGATAGATACACATTTTTAGGTCTTTCCCACTCTCTCTCTTGAT
TTTTTTTGGGCTTTCTTTTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTTTCTCTTTCTCTTTCTCTTTCGTAGTTTATTTT
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