Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr12	BNL1045	BNL1045b	marker_locus	127.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	BNL3537	BNL3537*	marker_locus	130.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	BNL4059	BNL4059	marker_locus	133.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m8e5-780	m8e5-780*	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	TMB0114	TMHE17	marker_locus	8.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m3e14-750	m3e14-750	marker_locus	17.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m5e8-500a	m5e8-500a	marker_locus	24.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	BNL2652	BNL2652	marker_locus	32 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m2e3-550	m2e3-550	marker_locus	32.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m1e11-680	m1e11-680	marker_locus	32.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	BNL2652	BNL2652b	marker_locus	32.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	BNL4007	BNL4007b	marker_locus	33.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m7e2-780	m7e2-780	marker_locus	41.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	S1302	S1302a	marker_locus	42.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m9e5-230	m9e5-230	marker_locus	45.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m8e12-800	m8e12-800	marker_locus	46.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m2e13-520	m2e13-520	marker_locus	46.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	CIR0096	CIR096	marker_locus	49.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	CIR0096	CIR096a	marker_locus	49.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	BNL1438	BNL1438b	marker_locus	51.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	BNL1438	BNL1438	marker_locus	52.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m2e12-400	m2e12-400*	marker_locus	53.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m11e3-600	m11e3-600	marker_locus	53.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m10e9-570	m10e9-570	marker_locus	53.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr13/lgA01	m13e3-300a	m13e3-300a	marker_locus	53.8 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)