BNL1438, BNL1438 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1438
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1438_orig
Source Typegenomic
Repeat Motif(AG)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL1438_F: CATCACCATGGAACGAAAGA
Primer 2BNL1438_R: TGCCATCTTACCCATTCCTC
PolymorphismP_ BNL1438
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:29146482..29146604 -
A13chromosomeA13:40106347..40106462 -
CM018227.1chromosomeCM018227.1:22427496..22427644 +
CM018214.1chromosomeCM018214.1:42549423..42549534 +
D5_13chromosomeD5_13:24845072..24845188 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:45590932..45591043 -
D10_13chromosomeD10_13:25853532..25853650 -
CM016626.1chromosomeCM016626.1:82774463..82774572 -
scaffold290.1supercontigscaffold290.1:1257085..1257208 +
At_chr9chromosomeAt_chr9:88414126..88414248 +
scaffold3573_A13supercontigscaffold3573_A13:37017..37132 +
scaffold4697_D13supercontigscaffold4697_D13:948574..948696 -
Ghir_D13chromosomeGhir_D13:23298403..23298523 +
Ghir_A13chromosomeGhir_A13:41857834..41857949 -
D13chromosomeD13:22928060..22928182 +
A13chromosomeA13:44276819..44276934 -
D13chromosomeD13:23534094..23534216 +
A13chromosomeA13:42592021..42592136 -
D13chromosomeD13:22500211..22500333 +
A13chromosomeA13:41807267..41807382 -
scaffold17677supercontigscaffold17677:101807..101953 -
Gbar_D13chromosomeGbar_D13:22429732..22429874 +
Gbar_A13chromosomeGbar_A13:42126716..42126827 -
D13chromosomeD13:22144266..22144412 +
A13chromosomeA13:44630039..44630150 -
CM017635.1chromosomeCM017635.1:22393907..22394053 +
CM017622.1chromosomeCM017622.1:43815883..43815998 -
CM017661.1chromosomeCM017661.1:23797316..23797434 +
CM017648.1chromosomeCM017648.1:45638717..45638822 -
CM017713.1chromosomeCM017713.1:22894365..22894487 +
CM017700.1chromosomeCM017700.1:43292751..43292862 -
D13chromosomeD13:23794091..23794211 +
A13chromosomeA13:44207205..44207320 -
Chr13chromosomeChr13:75838857..75838970 +
Chr13chromosomeChr13:44941465..44941576 +
Chr13chromosomeChr13:24397915..24398031 -
B_13chromosomeB_13:55066816..55066923 +
Chr13chromosomeChr13:24994963..24995082 -
chr02chromosomechr02:22493048..22493160 +
Chr_02chromosomeChr_02:19808215..19808331 +
Chr13chromosomeChr13:25187886..25187996 +
Chr02chromosomeChr02:21207969..21208083 +
E13chromosomeE13:54117074..54117193 -
F13chromosomeF13:31620643..31620788 +
Chr13chromosomeChr13:93073061..93073783 -
Chr02chromosomeBNL1438:1..231 .
Chr02:28492282..28492513 +
Chr7chromosomeBNL1438:1..231 .
Chr7:21810207..21810438 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1438_origBNL1438_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch13_At.13N/A84.5BNL1438View
2Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A121.08BNL1438View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A147BNL1438View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A92.01BNL1438View
5Xinluzao-1 x Hai-7124, F2 (2008)AD_ch13_At.13N/A24.4BNL1438View
6Handan-208 x Pima-90, F2:3 (2007)AD_ch13_At.13N/A52.3BNL1438View
7AD-genome wide Reference Map (2009)AD_ch13_At.13N/A188BNL1438View
8H18 x TM-1, F2 (2005)AD_ch13_At.13N/A81BNL1438View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A102.8BNL1438View
10SG 747 x Giza 75, BIL (2013)AD_ch13_At.13N/A35.9BNL1438View
11Monsanto SSR Bin Map, (2009)AD_ch13_At.13N/A81BNL1438View
12Handan-208 x Pima-90, F2:3 (2007)AD_ch13_At.13N/A51.9BNL1438bView
13TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A61.18BNL1438-120View
14Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch13_At.13N/A40.6BNL1438-120View
15TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A60.9BNL1438-120View
16TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A76.3BNL1438-120View
17PD 94042 x (AD)4-08, F2 (2016)AD_ch13_At.13N/A34.9BNL1438View
Sequence
>BNL1438 ID=BNL1438; Name=BNL1438; organism=Gossypium hirsutum; type=genetic_marker; length=116bp
CATCACCATGGAACGAAAGAGATGTTAATTAATGTAACTAAAACTTATGA
AGGTAGAAGGGAAAGAGAGAGAGAGAGAGAGAGAGAGAATATTTGAGAGG
AATGGGTAAGATGGCA