Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m2e7-590	m2e7-590	marker_locus	255.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL3592	BNL3592b	marker_locus	267.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL3592	BNL3592	marker_locus	269.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	MGHES0038	MGHES38ab*	marker_locus	271 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m7e3-470	m7e3-470	marker_locus	273.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m9e5-250	m9e5-250	marker_locus	274.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m5e2-550	m5e2-550	marker_locus	274.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL3442	BNL3442	marker_locus	274.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m3e3-480	m3e3-480	marker_locus	275.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m4e10-481	m4e10-481*	marker_locus	286.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m4e8-820	m4e8-820	marker_locus	296.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1066	BNL1066b	marker_locus	306.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1066	BNL1066a	marker_locus	306.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	m8e6-300	m8e6-300*	marker_locus	308.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL1231	BNL1231b	marker_locus	315.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr11/lgA03	BNL0836	BNL836a	marker_locus	332.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	S0508	S508b	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	S0261	S261	marker_locus	8.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	S0452	S452	marker_locus	16.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	m11e8-660	m11e8-660	marker_locus	21.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	m1e5-460	m1e5-460	marker_locus	24.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	m8e16-580	m8e16-580	marker_locus	29 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	m10e15-380	m10e15-380	marker_locus	30.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	m8e16-850	m8e16-850	marker_locus	32.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr12	m2e9-800	m2e9-800	marker_locus	32.4 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)