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Marker Overview
Name | BNL3442 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3442_orig
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Source Type | genomic |
Repeat Motif | (CA)14(TA)5 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3442_F: CATTAGCGGATTTGTCGTGA |
Primer 2 | BNL3442_R: AACGAACAAAGCAAAGCGAT |
Polymorphism | P_ BNL3442 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch11_At.11 | N/A | 15.4 | BNL3442 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch11_At.11 | N/A | 217 | BNL3442 | View |
3 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch11_At.11 | N/A | 145.7 | BNL3442 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch11_At.11 | N/A | 209.99 | BNL3442 | View |
5 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch11_At.11 | N/A | 274.7 | BNL3442 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch11_At.11 | N/A | 217 | BNL3442 | View |
7 | TM-1 x 3-79, RIL (2012) | AD_ch11_At.11 | N/A | 21.43 | BNL3442 | View |
8 | Emian-22 x 3-79, BC1 (2011) | AD_ch11_At.11 | N/A | 205.56 | BNL3442 | View |
9 | Palmeri x K-101, F2 (2007) | AD_ch11_At.11 | N/A | 179.1 | BNL3442 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch21_Dt.11 | N/A | 249 | BNL3442 | View |
11 | Yumian-1 x T586, F2:7 (2008) | AD_ch21_Dt.11 | N/A | 76.7 | BNL3442 | View |
12 | Yumian-1 x T586, RIL (2006) | AD_ch21_Dt.11 | N/A | 134 | BNL3442 | View |
13 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch11_At.11 | N/A | 71.7 | BNL3442 | View |
14 | Yumian-1 x T586, RIL (2015) | AD_ch21_Dt.11 | N/A | 37.2 | BNL3442 | View |
15 | TM-1 x 3-79, RIL (2014) | AD_ch11_At.11 | N/A | 22.3 | BNL3442 | View |
16 | GX1135 x GX100-2, F2 (2013) | AD_ch11_At.11 | N/A | 137.1 | BNL3442 | View |
17 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch21_Dt.11 | N/A | 105.3 | BNL3442 | View |
18 | SG 747 x Giza 75, BIL (2013) | AD_ch11_At.11 | N/A | 85.2 | BNL3442 | View |
19 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch21_Dt.11 | N/A | 55.3 | BNL3442 | View |
20 | GX1135 x GX100-2, RIL (2015) | AD_ch21_Dt.11 | N/A | 262.9 | BNL3442a | View |
21 | GX1135 x GX100-2, RIL (2016) | AD_ch21_Dt.11 | N/A | 262.5 | BNL3442a | View |
22 | Monsanto SSR Bin Map, (2009) | AD_ch11_At.11 | N/A | 21 | BNL3442a | View |
23 | TM-1 x Hai-7124, BC1 (2007) | AD_ch11_At.11 | N/A | 146 | BNL3442-125 | View |
24 | TM-1 x Hai-7124, BC1 (2008) | AD_ch11_At.11 | N/A | 146.99 | BNL3442-125 | View |
25 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch11_At.11 | N/A | 148.9 | BNL3442-125 | View |
26 | TM-1 x Hai-7124, BC1 (2012) | AD_ch11_At.11 | N/A | 20.7 | BNL3442-125 | View |
27 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_chU | N/A | 51.9 | BNL3442-2 | View |
28 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_chU | N/A | 27.5 | BNL3442-1 | View |
29 | Yumian-1 x T586, RIL (2009) | AD_ch21_Dt.11 | N/A | 152.4 | BNL3442/120y(C11) | View |
30 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch18_Dt.13 | N/A | 10.6 | BNL3442(C18) | View |
31 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch21_Dt.11 | N/A | 10.6 | BNL3442(C18) | View |
32 | GX1135 x GX100-2, RIL (2016) | AD_ch11_At.11 | N/A | 97.9 | BNL3442b | View |
33 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch21_Dt.11 | N/A | 13.83 | BNL3442 | View |
34 | TM-1 x 3-79, RIL (2012.v3) | AD_ch11_At.11 | N/A | 22.29 | BNL3442 | View |
35 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch11_At.11 | N/A | 219.2 | BNL3442 | View |
36 | MGG-293-793, MAGIC (2018) | AD_ch11_At.11 | N/A | 31.5 | BNL3442 | View |
Sequence
>BNL3442 ID=BNL3442; Name=BNL3442; organism=Gossypium hirsutum; type=genetic_marker; length=130bp CATTAGCGGATTTGTCGTGACCTATATATATATGTGTGTGTGTGTGTGTG TGTGTGTGTGGAGCCCATGAATGCCCGTATTCATTTGCTGGCTATGCCCA TCATTCAGCCATCGCTTTGCTTTGTTCGTT
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