Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL1043	BNL1043	marker_locus	106.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	JESPR0290	JESPR290	marker_locus	106.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	JESPR0208	JESPR208a	marker_locus	107.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL1414	BNL1414	marker_locus	108.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	JESPR0243	JESPR243	marker_locus	112.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL0219	BNL219	marker_locus	122.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	S0460	S460c	marker_locus	148 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	S0460	S460a	marker_locus	148 cM
Handan-208 x Pima-90, F2:3 (2007).chr09	BNL1162	BNL1162c*	marker_locus	154 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL0256	BNL256	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	MGHES0030	MGHES30ad	marker_locus	2.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	MGHES0030	MGHES30ae	marker_locus	2.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	S0237	S237b	marker_locus	15.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	TMB0325	TMHC10	marker_locus	27.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	S0321	S321	marker_locus	44.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	S0465	S465b	marker_locus	48.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	S0435	S435c	marker_locus	51.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	JESPR0152	JESPR152a*	marker_locus	64.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	CIR0009	CIR009c	marker_locus	66.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m5e1-440	m5e1-440	marker_locus	71.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m14e12-580	m14e12-580*	marker_locus	94.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m11e17-680	m11e17-680	marker_locus	106.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	BNL0391	BNL391*	marker_locus	111.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	MGHES0075	MGHES75a	marker_locus	116.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr10	m4e3-400	m4e3-400	marker_locus	117 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)