JESPR0290, JESPR0290 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0290
AliasJESPR290
Genbank IDAF351528
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351528.1
Source Typegenomic
Repeat Motif(CTT)6
Primer 1JESPR0290_F: ACCGGTCAGTCCTCATAATC
Primer 2JESPR0290_R: GCCAAGGTCGTAGTCCAGG
PolymorphismP_ JESPR0290
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:46577235..46577362 +
CM018223.1chromosomeCM018223.1:44285636..44285763 +
CM018210.1chromosomeCM018210.1:70352918..70353050 +
D5_09chromosomeD5_09:37769817..37769944 +
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:77057680..77057812 +
D10_09chromosomeD10_09:5975603..5975733 -
Dt_chr6chromosomeDt_chr6:6076538..6076665 -
D09chromosomeD09:44424279..44424406 +
Ghir_D09chromosomeGhir_D09:46372791..46372918 +
Ghir_A09chromosomeGhir_A09:74767914..74768038 +
D09chromosomeD09:45812861..45812988 +
D09chromosomeD09:46118991..46119118 +
D09chromosomeD09:44212876..44213003 +
At09chromosomeAt09:72163836..72163968 +
scaffold3493supercontigscaffold3493:17466..17598 +
scaffold25492supercontigscaffold25492:75681..75808 -
scaffold25492supercontigscaffold25492:71412..71544 -
Gbar_D09chromosomeGbar_D09:44988525..44988652 +
Gbar_A09chromosomeGbar_A09:70940284..70940416 +
D09chromosomeD09:47446030..47446157 +
A09chromosomeA09:72340464..72340596 +
CM017631.1chromosomeCM017631.1:45188376..45188515 +
CM017618.1chromosomeCM017618.1:72300558..72300690 +
CM017657.1chromosomeCM017657.1:46552787..46552917 +
CM017709.1chromosomeCM017709.1:45863452..45863579 +
CM017696.1chromosomeCM017696.1:72422649..72422781 +
D09chromosomeD09:47857363..47857490 +
Chr09chromosomeChr09:79951759..79951891 +
Chr09chromosomeChr09:43993078..43993205 +
B_09chromosomeB_09:63664055..63664187 +
Chr06chromosomeChr06:44509912..44510036 +
Chr_06chromosomeChr_06:30856570..30856697 +
Chr06chromosomeChr06:45753452..45753576 +
Chr06chromosomeChr06:31563647..31563768 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351528.1AF351528.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch09_At.09N/A47.5JESP290View
2Emian-22 x 3-79, BC1 (2011)AD_ch09_At.09N/A123.83JESPR290View
3TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A53.63JESPR290View
4Xinluzao-1 x Hai-7124, F2 (2008)AD_ch09_At.09N/A51.4JESPR290View
5Handan-208 x Pima-90, F2:3 (2007)AD_ch09_At.09N/A106.9JESPR290View
6Yumian-1 x T586, RIL (2015)AD_ch09_At.09N/A92.6JESPR290View
7TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A90.6JESPR290View
8TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch15_Dt.01N/A71.7JESPR290View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A126.8JESPR290View
10Monsanto SSR Bin Map, (2009)AD_ch09_At.09N/A41JESPR290View
11HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch09_At.09N/A101JESPR290-123View
12AD-genome wide Reference Map (2009)AD_ch09_At.09N/A51jespr0290View
13TM-1 x Hai-7124, BC1 (2008)AD_ch09_At.09N/A102.15JESPR290-125View
14TM-1 x Hai-7124, BC1 (2012)AD_ch09_At.09N/A102.2JESPR290-125View
15TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A90.57JESPR290View
Sequence
>JESPR0290 ID=JESPR0290; Name=JESPR0290; organism=Gossypium hirsutum; type=genetic_marker; length=128bp
ACCGGTCAGTCCTCATAATCATACCCCGCGCACCTAAACGCGGCAAACTG
CTCCTTTCGTCTTCTTCTTCTACTTCTTCATGCTCACTTTTCTCTGCCTT
ACAGCTTTACCTGGACTACGACCTTGGC