Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr05	m2e3-400	m2e3-400	marker_locus	209.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S1258	S1258a	marker_locus	211.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S0420	S420a	marker_locus	218 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL3602	BNL3602*	marker_locus	225.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S0269	S269a	marker_locus	230.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL0390	BNL390c*	marker_locus	232.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL1878	BNL1878c	marker_locus	238.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL0390	BNL390a	marker_locus	243.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	JESPR0134	JESPR134	marker_locus	243.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m7e3-580	m7e3-580	marker_locus	243.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL4078	BNL4078a	marker_locus	247.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL4078	BNL4078c	marker_locus	247.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	MGHES0030	MGHES30ac	marker_locus	249.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	CIR0062	CIR062a	marker_locus	253.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	JESPR0065	JESPR65b*	marker_locus	270.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	CIR0253	CIR253b*	marker_locus	287 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL4030	BNL4030b	marker_locus	291.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	CIR0179	CIR179a*	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	BNL3955	BNL3955	marker_locus	23.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m1e3-460	m1e3-460	marker_locus	35.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	BNL1064	BNL1064	marker_locus	42.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m7e15-680	m7e15-680	marker_locus	54.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	BNL2884	BNL2884	marker_locus	67.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m3e14-680	m3e14-680	marker_locus	76.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	BNL1169	BNL1169	marker_locus	77.9 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)