Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr04	m12e9-500	m12e9-500	marker_locus	52.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	BNL4047	BNL4047	marker_locus	54.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	m12e3-700	m12e3-700	marker_locus	55.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	m9e3-960	m9e3-960	marker_locus	62.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	BNL4015	BNL4015	marker_locus	80.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	CIR0249	CIR249	marker_locus	102.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	BNL0625	BNL625	marker_locus	105.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL3171	BNL3171a	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	CIR0373	CIR373c	marker_locus	15.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL3569	BNL3569	marker_locus	21.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL3029	BNL3029*	marker_locus	27.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	CIR0373	CIR373a*	marker_locus	40.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL3881	BNL3881	marker_locus	70.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S0287	S287	marker_locus	70.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m8e12-400	m8e12-400	marker_locus	72.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m3e1-900	m3e1-900	marker_locus	73.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S0435	S435b	marker_locus	73.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m13e10-680	m13e10-680	marker_locus	73.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL0206	BNL206a	marker_locus	73.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	CIR0048	CIR048b	marker_locus	76 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m7e2-880	m7e2-880	marker_locus	76.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S1288	S1288*	marker_locus	77.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S0309	S309a	marker_locus	77.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	CIR0224	CIR224b	marker_locus	77.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL2609	BNL2609b	marker_locus	81.3 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)