BNL0206, BNL0206 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0206
AliasBNL206
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source Typegenomic
Repeat Motif(CT)12
PCR ConditionAnnealing temperature: 55
Primer 1BNL0206_F: TTTCGTTCCTCACCTCCTATTT
Primer 2BNL0206_R: CAAACCTCAAACAATGAAATGAGATA
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:20436168..20436311 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:18380157..18380294 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:33026681..33026818 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr12chromosomeDt_chr12:33383911..33384054 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:18704223..18704366 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:19201576..19201719 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:18897706..18897849 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:19239255..19239398 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:18654320..18654463 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4776supercontigscaffold4776:155251..155388 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:18488836..18488973 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:18292547..18292684 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:18606528..18606673 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:19333489..19333626 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:18400802..18400939 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:19719235..19719378 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:32736924..32737061 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeBNL0206:1..229 .
Chr12:17767108..17767330 -		n/a
Chr7chromosomeBNL0206:1..229 .
Chr7:17762145..17762367 -		n/a
Chr07chromosomeBNL0206:6..229 .
Chr07:37056752..37056960 +		n/a
Chr8chromosomeBNL0206:6..229 .
Chr8:4684972..4685180 -		n/a
Germplasm
Stock NameType
Deltapine 90accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch22_Dt.04N/A86.7BNL206View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch22_Dt.04N/A36.7BNL206View
3Emian-22 x 3-79, BC1 (2011)AD_ch22_Dt.04N/A87.69BNL206View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch05_At.05N/A73.6BNL206aView
5Handan-208 x Pima-90, F2:3 (2007)AD_ch15_Dt.01N/A278.7BNL206bView
6Handan-208 x Pima-90, F2:3 (2007)AD_ch15_Dt.01N/A278.7BNL206cView
7AD-genome wide Reference Map (2009)AD_ch05_At.05N/A32BNL0206View
8AD-genome wide Reference Map (2009)AD_ch22_Dt.04N/A124BNL0206View
9SG 747 x Giza 75, BIL (2013)AD_ch22_Dt.04N/A76.3BNL0206View
10Monsanto SSR Bin Map, (2009)AD_ch22_Dt.04N/A41BNL0206View
11TM-1 x Hai-7124, BC1 (2008)AD_ch22_Dt.04N/A57.99BNL206-175View
12TM-1 x Hai-7124, BC1 (2012)AD_ch22_Dt.04N/A67.6BNL206-175View
Sequence
>BNL0206 ID=BNL0206; Name=BNL0206; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
TTTCGTTCCTCACCTCCTATTTTTCTTTGACTGAAAGTTCTCCTCTCTCT
CTCTCTCTCTCTCTCTTTGCTTTGATTCTTACCTGGTATTATTTTATTTT
TCCTTTTGAATTGAGAACTATCTCATTTCATTGTTTGAGGTTTG