BNL3569, BNL3569 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3569
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3569_orig
Source Typegenomic
Repeat Motif(CA)21
PCR ConditionAnnealing temperature: 55
Primer 1BNL3569_F: GCCAATCACCGAGAACAATT
Primer 2BNL3569_R: CGCTTATTGCCTTGATTGGT
PolymorphismP_ BNL3569
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:14244332..14244506 +
A05chromosomeA05:15227603..15227757 +
CM018219.1chromosomeCM018219.1:13328333..13328513 +
CM018206.1chromosomeCM018206.1:14896167..14896327 +
D5_05chromosomeD5_05:12615015..12615183 +
D10_05chromosomeD10_05:47785069..47785233 -
At_chr9chromosomeAt_chr9:45423998..45424152 +
At_chr9chromosomeAt_chr9:45419990..45420144 +
D05chromosomeD05:13339794..13339968 +
A05chromosomeA05:13503638..13503792 +
scaffold24982supercontigscaffold24982:177..331 -
Ghir_D05chromosomeGhir_D05:13877397..13877569 +
Ghir_A05chromosomeGhir_A05:15204130..15204284 +
D05chromosomeD05:13534356..13534530 +
A05chromosomeA05:14708872..14709026 +
D05chromosomeD05:13715051..13715221 +
A05chromosomeA05:15220078..15220232 +
D05chromosomeD05:13597787..13597959 +
A05chromosomeA05:15380594..15380748 +
scaffold21890supercontigscaffold21890:38949..39129 -
scaffold21136supercontigscaffold21136:1022..1182 -
Gbar_D05chromosomeGbar_D05:13771472..13771648 +
Gbar_A05chromosomeGbar_A05:14490466..14490626 +
D05chromosomeD05:13746116..13746296 +
A05chromosomeA05:15133606..15133760 +
CM017627.1chromosomeCM017627.1:13653420..13653586 +
CM017614.1chromosomeCM017614.1:14921816..14921972 +
CM017653.1chromosomeCM017653.1:14074479..14074633 +
CM017640.1chromosomeCM017640.1:15157342..15157496 +
CM017705.1chromosomeCM017705.1:13787263..13787431 +
CM017692.1chromosomeCM017692.1:14710865..14711025 +
D05chromosomeD05:14084619..14084793 +
A05chromosomeA05:15452832..15452986 +
Chr05chromosomeChr05:15982801..15982955 +
Chr05chromosomeChr05:12669054..12669224 +
B_05chromosomeB_05:71335559..71335723 -
Chr09chromosomeChr09:13161116..13161266 +
chr09chromosomechr09:11854542..11854696 +
Chr09chromosomeChr09:13548221..13548369 +
Chr09chromosomeChr09:11477067..11477219 +
F05chromosomeF05:12907915..12908073 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3569_origBNL3569_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A145.67BNL3569View
2Handan-208 x Pima-90, F2:3 (2007)AD_ch05_At.05N/A21.9BNL3569View
3AD-genome wide Reference Map (2009)AD_ch05_At.05N/A60BNL3569View
4Xinluzao-1 x Hai-7124, F2 (2008)AD_ch19_Dt.05N/A264.9BNL3569View
5AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A146BNL3569View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A81BNL3569View
7HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch05_At.05N/A65BNL3569-152View
8TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A62.01BNL3569aView
9TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A141.2BNL3569aView
10Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A141BNL3569aView
11TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A68.97BNL3569bView
12TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A117.3BNL3569bView
13Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A181BNL3569bView
14TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A141.24BNL3569aView
15TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A117.31BNL3569bView
16PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A95.9BNL3569View
Sequence
>BNL3569 ID=BNL3569; Name=BNL3569; organism=Gossypium hirsutum; type=genetic_marker; length=169bp
GCCAATCACCGAGAACAATTAAAAGCCAAGCATAAAAGACAGTTCCTACT
AGACATCTAATTTAGCTAATGAATCAGCGAAACCATTAACTTCCTTGTAA
ATATTCACACACACACACACACACACACACACACACACACACACACACTA
CCAATCAAGGCAATAAGCG