Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL3443	BNL3443	marker_locus	139 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m13e3-280	m13e3-280	marker_locus	145.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL2882	BNL2882	marker_locus	149.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m5e1-300	m5e1-300*	marker_locus	149.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	JESPR0161	JESPR161*	marker_locus	151.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m1e5-480	m1e5-480	marker_locus	153.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL3259	BNL3259	marker_locus	154.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m3e3-200	m3e3-200	marker_locus	156.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL3408	BNL3408	marker_locus	156.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m7e2-700	m7e2-700	marker_locus	158.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m7e2-670	m7e2-670	marker_locus	158.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL0226	BNL226a*	marker_locus	164.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL0226	BNL226b*	marker_locus	176.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	S1282	S1282	marker_locus	190.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL1045	BNL1045a	marker_locus	201.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	CIR0048	CIR048a	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	BNL2572	BNL2572	marker_locus	20.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	m7e9-320	m7e9-320	marker_locus	29.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	BNL3835	BNL3835	marker_locus	30 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	m7e9-360	m7e9-360	marker_locus	31.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	BNL2939	BNL2939	marker_locus	41.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	BNL3994	BNL3994	marker_locus	46.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	m9e3-950	m9e3-950	marker_locus	50.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	m8e8-740	m8e8-740	marker_locus	50.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr04	m6e6-650	m6e6-650	marker_locus	51.6 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)