BNL2572, BNL2572 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2572
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2572_orig
Source Typegenomic
Repeat Motif(GA)23
PCR ConditionAnnealing temperature: 55
Primer 1BNL2572_F: GTCCTATTACTAAAATTGTTAATTTAGCC
Primer 2BNL2572_R: CGATGTTAAATCAATCAGGTCA
PolymorphismP_ BNL2572
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL2572_FBNL2572_FGossypium hirsutumprimer
BNL2572_RBNL2572_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber uniformityqFU.0s-RIL_ch25-1.lq08.1Gossypium hirsutumQTL
fiber lengthqUHML.0s-RIL.15_ch25.ay10.3Gossypium hirsutumQTL
fiber lengthqUHML.0s-RIL.15_ch25.ay13Gossypium hirsutumQTL
fiber lengthqUHML.0s-RIL.15_ch25.gy10.2Gossypium hirsutumQTL
fiber lengthqUHML.0s-RIL.15_ch25.qz09.2Gossypium hirsutumQTL
verticillium wilt disease severityqVWDS.0s-RIL.17_c04.ay15Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2572BNL2572Gossypium hirsutummarker_locus
BNL2572-249BNL2572-249Gossypium hirsutummarker_locus
BNL2572-290BNL2572-290Gossypium hirsutummarker_locus
BNL2572BNL2572-83.689Gossypium hirsutummarker_locus
BNL2572BNL2572-147.3Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2572_origBNL2572_origGossypium hirsutumsequence_feature


Sequence
>BNL2572 ID=BNL2572|Name=BNL2572|organism=Gossypium hirsutum|type=genetic_marker|length=250bp
GTCCTATTACTAAAATTGTTAATTTAGCCGTTAAATGATATGTCAAATCT
TATGTAGTATAGATGTAGGATAGTTTAAAATGAAATTTTTAAATAGTGAA
TATTGTAAAAATATTAGTTTTGAGAGGTTTTCAAAACTTTTACAGAATCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATT
TAAGGTTAAATTAACAATTTTAATAATATGACCTGATTGATTTAACATCG
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
13-79 x NM24016, RIL (2008)3-79 x NM24016, RIL (2008).3N-RIL_chr10-2N/AAD_chr.1026.8BNL2572View
2CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr04N/AAD_chr.0432.6BNL2572View
3Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr04N/AAD_chr.0452.5BNL2572View
4Guazuncho-2 x VH8-4602, BC2 (2005)Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr04N/AAD_chr.040BNL2572View
5Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c04N/AAD_chr.0412.06BNL2572View
6Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch04N/AAD_chr.048.87BNL2572View
7Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr04N/AAD_chr.0420.5BNL2572View
8Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr04N/AAD_chr.0450BNL2572View
9Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr04N/AAD_chr.0422.5BNL2572View
10AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr04N/AAD_chr.0425BNL2572View
11TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c04N/AAD_chr.0482.71BNL2572View
12Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg24/chr04N/AAD_chr.0459.4BNL2572View
13Yumian-1 x T586, RIL (2015)YT-RIL.15_chr04N/AAD_chr.0492.7BNL2572View
14TM-1 x 3-79, RIL (2014)T3-RIL.14_chr04N/AAD_chr.0483.7BNL2572View
15W10 x TM-1, F2:3 (2015)WT-F2:3_chr04-1N/AAD_chr.040BNL2572View
160-153 x sGK9708, RIL (2015)0s-RIL.15_chr25N/AAD_chr.2550.45BNL2572View
170-153 x sGK9708, RIL (2016)0s-RIL_chr25-1N/AAD_chr.25130.1BNL2572View
18CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr04N/AAt.0496.7BNL2572View
190-153 x sGK9708, RIL (2017)0s-RIL.17_chr04N/AAD_chr.0482.91BNL2572View
20HS-46 x MARCABUCAG8US-1-88, RIL (2009)HS-46 x MARCABUCAG8US-1-88, RIL (2009).HSM-RIL_chr04N/AAD_chr.0429BNL2572-249View
21TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr04N/AAD_chr.0491.8BNL2572-290View
22TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr04/A4N/AAD_chr.0493.7BNL2572-290View
23TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.04N/AAD_chr.0483.69BNL2572View
24PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr04N/AAt.04147.3BNL2572View