BNL3835, BNL3835 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3835
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3835_orig
Source Typegenomic
Repeat Motif(TG)18
PCR ConditionAnnealing temperature: 55
Primer 1BNL3835_F: ATTTGGTCATTTTGGTGTATGG
Primer 2BNL3835_R: TGCATAATAAAGGGCATTTACA
PolymorphismP_ BNL3835
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A12chromosomeA12:71704559..71704745 +
CM018213.1chromosomeCM018213.1:69065208..69065389 +
CM018213.1chromosomeCM018213.1:69079663..69079878 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:32404294..32404490 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:32384036..32384251 -
At_chr8chromosomeAt_chr8:60099742..60099930 +
At_chr8chromosomeAt_chr8:60114315..60114532 +
A12chromosomeA12:58370483..58370669 +
Ghir_A12chromosomeGhir_A12:76599494..76599680 +
A12chromosomeA12:77867431..77867617 +
A12chromosomeA12:74863611..74863799 +
A12chromosomeA12:74878082..74878299 +
A12chromosomeA12:71775126..71775310 +
scaffold798supercontigscaffold798:94821..95002 -
scaffold798supercontigscaffold798:99608..99789 -
scaffold798supercontigscaffold798:66235..66450 -
scaffold798supercontigscaffold798:64390..64558 -
Gbar_A12chromosomeGbar_A12:71402502..71402683 +
Gbar_A12chromosomeGbar_A12:71416957..71417172 +
A12chromosomeA12:71182121..71182302 +
A12chromosomeA12:71196576..71196791 +
CM017621.1chromosomeCM017621.1:72568203..72568387 +
CM017621.1chromosomeCM017621.1:72582628..72582843 +
CM017647.1chromosomeCM017647.1:75356943..75357135 +
CM017647.1chromosomeCM017647.1:75377234..75377451 +
CM017699.1chromosomeCM017699.1:71396164..71396344 +
CM017699.1chromosomeCM017699.1:71410615..71410830 +
A12chromosomeA12:77833487..77833673 +
Chr12chromosomeChr12:15997288..15997554 -
Chr12chromosomeChr12:15983147..15983361 -
Chr12chromosomeChr12:84628390..84628590 +
Chr12chromosomeChr12:84648646..84648861 +
B_12chromosomeB_12:58652554..58652750 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3835_origBNL3835_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A63.4BNL3835View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch12_At.12N/A101.01BNL3835View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch04_At.04N/A48.52BNL3835View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch04_At.04N/A30BNL3835View
5AD-genome wide Reference Map (2009)AD_ch04_At.04N/A86BNL3835View
6TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A47.72BNL3835View
7CCRI-36 x Hai-7124, F2 (2007)AD_ch12_At.12N/A152.9BNL3835View
8AD-genome wide Reference Map (2009)AD_ch12_At.12N/A168BNL3835View
9DH962 x Jinmian-6, F2 (2009)AD_ch12_At.12N/A27.3BNL3835View
10DH962 x Jinmian-6, F2 (2009)AD_ch12_At.12N/A27.3BNL3835View
11Yumian-1 x 7235, RIL (2015)AD_ch12_At.12N/A100.2BNL3835View
12DH962 X Ji Mian 5, F2 (2015)AD_ch12_At.12N/A27.82BNL3835View
13TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A47.7BNL3835View
14DH962 x Ji Mian 5, RIL (2015)AD_ch12_At.12N/A7.1BNL3835View
15Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A61BNL3835View
16Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch04_At.04N/A95.9BNL3835bView
17Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch12_At.12N/A140.4BNL3835aView
18HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch12_At.12N/A30BNL3835-188View
19TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A47.72BNL3835View
Sequence
>BNL3835 ID=BNL3835; Name=BNL3835; organism=Gossypium hirsutum; type=genetic_marker; length=187bp
ATTTGGTCATTTTGGTGTATGGTTTGGTAATGAATTTAGCCATTTATGTT
GGCTTGTAAATGTTAAGTGTTTGGTTTTTTATATAGCCATGAGAGTTGGC
TTATTTTGGCATATTTGGTTGTGCATATATATGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTAAATGCCCTTTATTATGCA