Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr05	S0093	S93*	marker_locus	81.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m10e2-280	m10e2-280*	marker_locus	86.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S0040	S40	marker_locus	94.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m7e2-820	m7e2-820*	marker_locus	98 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL1878	BNL1878a	marker_locus	114.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL2656	BNL2656b	marker_locus	119.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m4e5-400	m4e5-400	marker_locus	134.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m8e8-800	m8e8-800	marker_locus	136.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m7e11-300	m7e11-300	marker_locus	137.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m14e17-520	m14e17-520	marker_locus	139.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL1878	BNL1878e	marker_locus	145 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	CIR0034	CIR034	marker_locus	150 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL2448	BNL2448a	marker_locus	150.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL2656	BNL2656a	marker_locus	153.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	NAU0861	NAU861	marker_locus	161.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL2609	BNL2609a	marker_locus	177.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m3e1-820	m3e1-820	marker_locus	191.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL3976	BNL3976	marker_locus	200 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	S0477	S477b	marker_locus	201.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m2e14-600	m2e14-600	marker_locus	204.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m2e5-500	m2e5-500	marker_locus	206.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m2e8-800	m2e8-800	marker_locus	208.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	BNL3995	BNL3995	marker_locus	208.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m5e1-520	m5e1-520	marker_locus	209.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr05	m2e3-400	m2e3-400	marker_locus	209.4 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)