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Marker Overview
| Name | BNL3995 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3995_orig
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| Source Type | genomic |
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| Repeat Motif | (AC)16 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3995_F: ATATTTTATTCTTTTAATAGCTTTATTCCC |
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| Primer 2 | BNL3995_R: TTGGAAAAACCCATGGTGAT |
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| Polymorphism | P_ BNL3995 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | 3-79 x NM24016, RIL (2008) | AD_ch05_At.05 | N/A | 0 | BNL3995 | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch05_At.05 | N/A | 74.2 | BNL3995 | View |
| 3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch05_At.05 | N/A | 258.5 | BNL3995 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch05_At.05 | N/A | 95.25 | BNL3995 | View |
| 5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch05_At.05 | N/A | 78.74 | BNL3995 | View |
| 6 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch05_At.05 | N/A | 208.8 | BNL3995 | View |
| 7 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 227 | BNL3995 | View |
| 8 | TM-1 x 3-79, RIL (2006) | AD_ch05_At.05 | N/A | 23.7 | BNL3995 | View |
| 9 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 130.17 | BNL3995 | View |
| 10 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 67.6 | BNL3995 | View |
| 11 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch05_At.05 | N/A | 187.5 | BNL3995 | View |
| 12 | Monsanto SSR Bin Map, (2009) | AD_ch05_At.05 | N/A | 41 | BNL3995 | View |
| 13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch05_At.05 | N/A | 154.1 | BNL3995-210 | View |
| 14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 143.49 | BNL3995-210 | View |
| 15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 63.3 | BNL3995-210 | View |
| 16 | SG 747 x Giza 75, BIL (2013) | AD_ch05_At.05 | N/A | 137 | BNL3995b | View |
| 17 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 67.56 | BNL3995 | View |
| 18 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch05_At.05 | N/A | 200.6 | BNL3995 | View |
Sequence
>BNL3995 ID=BNL3995; Name=BNL3995; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
ATATTTTATTCTTTTAATAGCTTTATTCCCACTTATTAACTACTGCTACA
CACACACACACACACACACACACACACACATAGTATTCCCCAATAGTTTA
CACTTAGGACTAACACAAACTTAGCTCCAGAATATATAACCATGCTTATT
TATATCTATATTTCTTTCACTTTGTCAGATCACCATGGGTTTTTCCAA
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