Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr06	m10e2-680	m10e2-680	marker_locus	83.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	S0460	S460f	marker_locus	83.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m3e2-650	m3e2-650	marker_locus	85.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m10e10-430	m10e10-430	marker_locus	86.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m8e17-300	m8e17-300	marker_locus	87.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m14e5-500	m14e5-500	marker_locus	87.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m12e9-780	m12e9-780	marker_locus	88.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m3e1-830	m3e1-830	marker_locus	88.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	BNL3987	BNL3987*	marker_locus	89.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m2e3-450	m2e3-450	marker_locus	89.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	BNL3812	BNL3812	marker_locus	90.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	S0460	S460e*	marker_locus	91.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m8e17-250	m8e17-250	marker_locus	96.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m4e6-600	m4e6-600	marker_locus	97 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	BNL1440	BNL1440c	marker_locus	113.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	BNL1440	BNL1440e	marker_locus	130.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m3e5-550	m3e5-550	marker_locus	149.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m11e7-500	m11e7-500	marker_locus	168.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m7e3-400	m7e3-400	marker_locus	170.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m10e2-670	m10e2-670	marker_locus	170.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	TMB0154	TMHD02	marker_locus	173.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m8e10-250	m8e10-250	marker_locus	175.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	ENV3UBC811	Env3UBC811a	marker_locus	175.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m3e2-500	m3e2-500	marker_locus	185 cM
Handan-208 x Pima-90, F2:3 (2007).chr06	m10e16-400	m10e16-400	marker_locus	196.8 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)