CIR0034, CIR0034 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0034
AliasCIR34
CIR034
Genbank IDAJ566983
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566983
Source Typegenomic
Repeat Motif(GT)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR034_F: TTGAACCAAGAATGGAA
Primer 2CIR034_R: TGTCACGCCATATACACT
Product Length146
PolymorphismP_ CIR0034
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566983
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:27047196..27047341 -
A05chromosomeA05:27108039..27108255 -
CM018206.1chromosomeCM018206.1:25974497..25974708 -
CM018206.1chromosomeCM018206.1:26020156..26020374 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:26483527..26483672 +
At_chr9chromosomeAt_chr9:58145093..58145238 +
A05chromosomeA05:23939796..23939941 -
A05chromosomeA05:24028461..24028677 -
Ghir_D05chromosomeGhir_D05:23580709..23580848 +
Ghir_A05chromosomeGhir_A05:25888193..25888338 -
Ghir_A05chromosomeGhir_A05:25949014..25949230 -
A05chromosomeA05:25939863..25940008 -
A05chromosomeA05:25979597..25979813 -
A05chromosomeA05:26797917..26798062 -
A05chromosomeA05:26858750..26858966 -
A05chromosomeA05:25861503..25861648 -
A05chromosomeA05:25922349..25922565 -
At05chromosomeAt05:21203214..21203425 -
At05chromosomeAt05:21207452..21207663 -
At05chromosomeAt05:21263587..21263805 -
At05chromosomeAt05:21261875..21262093 -
scaffold25078supercontigscaffold25078:153551..153762 -
scaffold25078supercontigscaffold25078:149313..149524 -
scaffold1761supercontigscaffold1761:17216..17434 -
scaffold1761supercontigscaffold1761:15504..15722 -
scaffold10130supercontigscaffold10130:198261..198400 -
Gbar_D05chromosomeGbar_D05:23431524..23431663 +
Gbar_A05chromosomeGbar_A05:24740385..24740596 -
Gbar_A05chromosomeGbar_A05:24786042..24786260 -
A05chromosomeA05:26325737..26325948 -
A05chromosomeA05:26371803..26372021 -
CM017614.1chromosomeCM017614.1:26337379..26337594 -
CM017614.1chromosomeCM017614.1:26400312..26400530 -
CM017640.1chromosomeCM017640.1:26603636..26603781 -
CM017640.1chromosomeCM017640.1:26669043..26669261 -
CM017692.1chromosomeCM017692.1:26010897..26011112 -
CM017692.1chromosomeCM017692.1:26056012..26056230 -
A05chromosomeA05:27247184..27247329 -
A05chromosomeA05:27308028..27308244 -
Chr05chromosomeChr05:27647498..27647643 +
Chr05chromosomeChr05:26860131..26860276 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566983AJ566983Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch05_At.05N/A118.4CIR034View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch05_At.05N/A165.8CIR034View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch05_At.05N/A44.01CIR034View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch05_At.05N/A35.64CIR034View
5Handan-208 x Pima-90, F2:3 (2007)AD_ch05_At.05N/A150CIR034View
6TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A89.85CIR034View
7TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A111.7CIR034View
8AD-genome wide Reference Map (2009)AD_ch05_At.05N/A160cir0034View
9TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A111.73CIR034View
Sequence
>CIR0034 ID=CIR0034; Name=CIR0034; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
TTGAACCAAGAATGGAAAGTTGCCAAAAATGGCTTGCATGTCGCACGATA
AAGGAGGTATGGCGTCACACAAGGCGAATTTCTACCTTATTTTTGTTTAA
AGGGGTGTGTGTGTGTGTCGCATCATAGAGTGTATATGGCGTGACA