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Marker Overview
| Name | BNL3171 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3171_orig
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| Source Type | genomic |
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| Repeat Motif | (GA)26 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3171_F: GAAAAATTGAGGAAGGACATACG |
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| Primer 2 | BNL3171_R: GGCCACAACCGAATTTACTG |
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| Polymorphism | P_ BNL3171 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch21_Dt.11 | N/A | 35 | BNL3171 | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch21_Dt.11 | N/A | 83.03 | BNL3171 | View |
| 3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch21_Dt.11 | N/A | 195.3 | BNL3171 | View |
| 4 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch21_Dt.11 | N/A | 128.5 | BNL3171 | View |
| 5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch21_Dt.11 | N/A | 123.3 | BNL3171 | View |
| 6 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch21_Dt.11 | N/A | 130.21 | BNL3171 | View |
| 7 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch21_Dt.11 | N/A | 83.3 | BNL3171 | View |
| 8 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 29 | BNL3171 | View |
| 9 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch21_Dt.11 | N/A | 155.6 | BNL3171 | View |
| 10 | Palmeri x K-101, F2 (2007) | AD_ch21_Dt.11 | N/A | 134.4 | BNL3171 | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch21_Dt.11 | N/A | 139 | BNL3171 | View |
| 12 | TM-1 x 3-79, RIL (2012) | AD_ch21_Dt.11 | N/A | 53.15 | BNL3171 | View |
| 13 | TM-1 x 3-79, RIL (2014) | AD_ch21_Dt.11 | N/A | 52.9 | BNL3171 | View |
| 14 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch21_Dt.11 | N/A | 52.2 | BNL3171 | View |
| 15 | GX1135 x GX100-2, F2 (2013) | AD_ch11_At.11 | N/A | 88 | BNL3171 | View |
| 16 | GX1135 x GX100-2, RIL (2015) | AD_ch21_Dt.11 | N/A | 169.1 | BNL3171 | View |
| 17 | GX1135 x GX100-2, RIL (2016) | AD_ch21_Dt.11 | N/A | 169.1 | BNL3171 | View |
| 18 | GX1135 x VGX100-2, RIL (2016) | AD_ch21_Dt.11 | N/A | 208.1 | BNL3171 | View |
| 19 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch11_At.11 | N/A | 38.9 | BNL3171 | View |
| 20 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch21_Dt.11 | N/A | 71.7 | BNL3171 | View |
| 21 | Monsanto SSR Bin Map, (2009) | AD_ch21_Dt.11 | N/A | 41 | BNL3171 | View |
| 22 | Deltapine-61 x Texas-701, F2 (2007) | AD_ch21_Dt.11 | N/A | 77.7 | BNL3171-221 | View |
| 23 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch05_At.05 | N/A | 0 | BNL3171a | View |
| 24 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch21_Dt.11 | N/A | 7.9 | BNL3171b | View |
| 25 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch11_At.11 | N/A | 48.7 | BNL3171-230 | View |
| 26 | TM-1 x Hai-7124, BC1 (2007) | AD_ch21_Dt.11 | N/A | 132.3 | BNL3171-230 | View |
| 27 | TM-1 x Hai-7124, BC1 (2008) | AD_ch21_Dt.11 | N/A | 142.17 | BNL3171-230 | View |
| 28 | TM-1 x Hai-7124, BC1 (2012) | AD_ch21_Dt.11 | N/A | 42.4 | BNL3171-230 | View |
| 29 | GB713 x Nem-X, F2 (2011) | AD_ch21_Dt.11 | N/A | 85.2 | BNL3171_236 | View |
| 30 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch21_Dt.11 | N/A | 33.34 | BNL3171 | View |
| 31 | TM-1 x 3-79, RIL (2012.v3) | AD_ch21_Dt.11 | N/A | 52.92 | BNL3171 | View |
| 32 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch21_Dt.11 | N/A | 133.9 | BNL3171 | View |
| 33 | MGG-293-793, MAGIC (2018) | AD_ch21_Dt.11 | N/A | 72.7 | BNL3171 | View |
Sequence
>BNL3171 ID=BNL3171; Name=BNL3171; organism=Gossypium hirsutum; type=genetic_marker; length=232bp
GAAAAATTGAGGAAGGACATACGAGGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCTGGGTTTTGA
GTAGTTTTAAATTTTATTTACTCGGCTATTTTACTTAAATAGTCTAAAAA
AATATTATATTTACAAAAATAACCTAGGTTTAAAAACATTCACCAAAATA
ACCTGAAATGAACAGTAAATTCGGTTGTGGCC
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