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Marker Overview
Name | CIR0373 |
Alias | CIR373
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Genbank ID | AJ567303 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567303
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Source Type | genomic |
Repeat Motif | (AC)9 |
PCR Condition | Annealing temperature: 51 |
Primer 1 | CIR373_F: ACCATTGACTTCCCTGT |
Primer 2 | CIR373_R: CCCTCTTGGTGTTATGTC |
Product Length | 166 |
Polymorphism | P_ CIR0373 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch05_At.05 | N/A | 106.76 | CIR373 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch05_At.05 | N/A | 97.3 | CIR373 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch05_At.05 | N/A | 72.47 | CIR373 | View |
4 | TM-1 x 3-79, RIL (2006) | AD_ch05_At.05 | N/A | 21.2 | CIR373 | View |
5 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 62.09 | CIR373 | View |
6 | TM-1 x 3-79, RIL (2011) | AD_ch19_Dt.05 | N/A | 6.1 | CIR373 | View |
7 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 141.2 | CIR373 | View |
8 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch05_At.05 | N/A | 84.1 | CIR373 | View |
9 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch05_At.05 | N/A | 15.2 | CIR373c | View |
10 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch05_At.05 | N/A | 40.3 | CIR373a* | View |
11 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch05_At.05 | N/A | 64 | CIR373-161 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 76 | cir0373 | View |
13 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 141.18 | CIR373 | View |
Sequence
>CIR0373 ID=CIR0373; Name=CIR0373; organism=Gossypium hirsutum; type=genetic_marker; length=166bp ACCATTGACTTCCCTGTAAATATTCACAAAAACACACACACACACACACA TATTACCAATCAAGGCAATAAGCGCCTGTTCATGCAGCCATTGAGATGTT ACAAAGACCAAGGCAATTTTAATGGCATGGACCTCTGCATCATTCGATGA CATAACACCAAGAGGG
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