CIR0373, CIR0373 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0373
AliasCIR373
Genbank IDAJ567303
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567303
Source Typegenomic
Repeat Motif(AC)9
PCR ConditionAnnealing temperature: 51
Primer 1CIR373_F: ACCATTGACTTCCCTGT
Primer 2CIR373_R: CCCTCTTGGTGTTATGTC
Product Length166
PolymorphismP_ CIR0373
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:15227684..15227849 +
CM018206.1chromosomeCM018206.1:14896248..14896419 +
D5_05chromosomeD5_05:12615096..12615275 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:14965190..14965355 +
D10_05chromosomeD10_05:47784977..47785152 -
CM016626.1chromosomeCM016626.1:22000112..22000278 +
At_chr9chromosomeAt_chr9:45424079..45424244 +
At_chr9chromosomeAt_chr9:45420071..45420236 +
A05chromosomeA05:13503719..13503884 +
scaffold24982supercontigscaffold24982:85..250 -
Ghir_A05chromosomeGhir_A05:15204211..15204376 +
A05chromosomeA05:14708953..14709118 +
D05chromosomeD05:13715132..13715313 +
A05chromosomeA05:15220159..15220324 +
A05chromosomeA05:15380675..15380840 +
scaffold21136supercontigscaffold21136:930..1101 -
Gbar_A05chromosomeGbar_A05:14490547..14490718 +
A05chromosomeA05:15133687..15133852 +
CM017627.1chromosomeCM017627.1:13653501..13653678 +
CM017614.1chromosomeCM017614.1:14921897..14922064 +
CM017653.1chromosomeCM017653.1:14074560..14074725 +
CM017640.1chromosomeCM017640.1:15157423..15157588 +
CM017705.1chromosomeCM017705.1:13787344..13787523 +
CM017692.1chromosomeCM017692.1:14710946..14711117 +
A05chromosomeA05:15452913..15453078 +
Chr05chromosomeChr05:15982882..15983047 +
Chr05chromosomeChr05:14817711..14817876 +
Chr05chromosomeChr05:12669135..12669316 +
B_05chromosomeB_05:71335467..71335642 -
Chr09chromosomeChr09:13161197..13161358 +
chr09chromosomechr09:11854242..11854788 +
Chr09chromosomeChr09:13548302..13548461 +
Chr09chromosomeChr09:11477148..11477445 +
F05chromosomeF05:12907996..12908165 +
Chr13chromosomeChr13:179929520..179929689 -
Chr09chromosomeCIR0373:1..454 .
Chr09:12572939..12573408 +
Chr9chromosomeCIR0373:1..454 .
Chr9:20091741..20092208 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567303AJ567303Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A106.76CIR373View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch05_At.05N/A97.3CIR373View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch05_At.05N/A72.47CIR373View
4TM-1 x 3-79, RIL (2006)AD_ch05_At.05N/A21.2CIR373View
5TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A62.09CIR373View
6TM-1 x 3-79, RIL (2011)AD_ch19_Dt.05N/A6.1CIR373View
7TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A141.2CIR373View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A84.1CIR373View
9Handan-208 x Pima-90, F2:3 (2007)AD_ch05_At.05N/A15.2CIR373cView
10Handan-208 x Pima-90, F2:3 (2007)AD_ch05_At.05N/A40.3CIR373a*View
11HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch05_At.05N/A64CIR373-161View
12AD-genome wide Reference Map (2009)AD_ch05_At.05N/A76cir0373View
13TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A141.18CIR373View
Sequence
>CIR0373 ID=CIR0373; Name=CIR0373; organism=Gossypium hirsutum; type=genetic_marker; length=166bp
ACCATTGACTTCCCTGTAAATATTCACAAAAACACACACACACACACACA
TATTACCAATCAAGGCAATAAGCGCCTGTTCATGCAGCCATTGAGATGTT
ACAAAGACCAAGGCAATTTTAATGGCATGGACCTCTGCATCATTCGATGA
CATAACACCAAGAGGG