CIR0249, CIR0249 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0249
AliasCIR249
Genbank IDAJ567194
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567194
Source Typegenomic
Repeat Motif(CA)8(N)3(AT)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR249_F: TGCATACCAACATGACC
Primer 2CIR249_R: GACTCAATTTCAACTCAACA
Product Length194
PolymorphismP_ CIR0249
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567194
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567194AJ567194Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch04_At.04N/A125.7CIR249View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch04_At.04N/A66.51CIR249View
3Handan-208 x Pima-90, F2:3 (2007)AD_ch04_At.04N/A102.1CIR249View
4DH962 x Jinmian-6, F2 (2009)AD_ch04_At.04N/A39.4CIR249View
5DH962 x Jinmian-6, F2 (2009)AD_ch04_At.04N/A39.4CIR249View
6DH962 X Ji Mian 5, F2 (2015)AD_ch04_At.04N/A43.05CIR249View
7DH962 x Ji Mian 5, RIL (2015)AD_ch04_At.04N/A44.4CIR249View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch04_At.04N/A91.8CIR249View
9AD-genome wide Reference Map (2009)AD_ch04_At.04N/A141cir0249View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch04_At.04N/A29.93CIR249View
Sequence
>CIR0249 ID=CIR0249; Name=CIR0249; organism=Gossypium hirsutum; type=genetic_marker; length=194bp
TGCATACCAACATGACCATATAATCATGCCATCACACACACACACACACG
CATATATATATATATTGATAACTAGATTACAAATCCACTAATGTCATCAA
AAGAGACTCCGAACTAATATTGGTCCTAGGTACATGCCAACTCAAAAATA
ACATTCGAAAGTTCATATTAACTTTGTTGAGTTGAAATTGAGTC