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Marker Overview
Name | BNL3955 |
Alias | MAS-L18
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Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3955_orig
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Source Type | genomic |
Repeat Motif | (CA)12, (GT)13 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3955_F: AGAGATGCAATGGGATCGAC |
Primer 2 | BNL3955_R: ATGTGATAATGCGGGGAATG |
Polymorphism | P_ BNL3955 |
Publication | [view all] |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
File Name | Legend |
48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch17_Dt.03 | N/A | 122.3 | BNL3955 | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch05_At.05 | N/A | 193.25 | BNL3955 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch06_At.06 | N/A | 64.36 | BNL3955 | View |
4 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch06_At.06 | N/A | 23.4 | BNL3955 | View |
5 | AD-genome wide Reference Map (2009) | AD_ch17_Dt.03 | N/A | 93 | BNL3955 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 257 | BNL3955 | View |
7 | AD-genome wide Reference Map (2009) | AD_ch06_At.06 | N/A | 61 | BNL3955 | View |
8 | TM-1 x 3-79, RIL (2012) | AD_ch17_Dt.03 | N/A | 69.83 | BNL3955 | View |
9 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_chU | N/A | 12 | BNL3955 | View |
10 | 3-79 x NM24016, RIL (2008) | AD_ch06_At.06 | N/A | 5.6 | BNL3955 | View |
11 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A12 | N/A | 223.6 | BNL3955 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch22_Dt.04 | N/A | 71 | BNL3955 | View |
13 | TM-1 x 3-79, RIL (2014) | AD_ch17_Dt.03 | N/A | 54.6 | BNL3955 | View |
14 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch17_Dt.03 | N/A | 77.9 | BNL3955 | View |
15 | Monsanto SSR Bin Map, (2009) | AD_ch17_Dt.03 | N/A | 61 | BNL3955 | View |
16 | Deltapine x Giza-83, F2 (2008) | AD_chU | N/A | 493.1 | MAS-L18-190 | View |
17 | Deltapine x Giza-83, F2 (2008) | AD_chU | N/A | 494.6 | MAS-L18-200 | View |
18 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch06_At.06 | N/A | 143.6 | BNL3955a | View |
19 | Palmeri x K-101, F2 (2007) | AD_ch17_Dt.03 | N/A | 53.5 | BNL3955a | View |
20 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch17_Dt.03 | N/A | 215.6 | BNL3955b | View |
21 | Palmeri x K-101, F2 (2007) | AD_ch22_Dt.04 | N/A | 25 | BNL3955b | View |
22 | TM-1 x Hai-7124, BC1 (2007) | AD_ch17_Dt.03 | N/A | 89.7 | BNL3955-175 | View |
23 | TM-1 x Hai-7124, BC1 (2008) | AD_ch17_Dt.03 | N/A | 11.69 | BNL3955-175 | View |
24 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch17_Dt.03 | N/A | 34.6 | BNL3955-175 | View |
25 | TM-1 x Hai-7124, BC1 (2012) | AD_ch17_Dt.03 | N/A | 50.6 | BNL3955-175 | View |
26 | TM-1 x 3-79, RIL (2012.v3) | AD_ch17_Dt.03 | N/A | 54.63 | BNL3955 | View |
Sequence
>BNL3955 ID=BNL3955; Name=BNL3955; organism=Gossypium hirsutum; type=genetic_marker; length=169bp AGAGATGCAATGGGATCGACTACTCCATCTGCATCGGAGTACCCAATTGT CTTGCAACCTCCTCGTTAGTGTGGTTCATTCATTTTTACTACTAACCTAG TTTTTTTTTCACAACCATCACAACACACACACACACACACACACACACTC ATTCCCCGCATTATCACAT
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