BNL3955, BNL3955 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3955
AliasMAS-L18
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3955_orig
Source Typegenomic
Repeat Motif(CA)12, (GT)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL3955_F: AGAGATGCAATGGGATCGAC
Primer 2BNL3955_R: ATGTGATAATGCGGGGAATG
PolymorphismP_ BNL3955
Publication[view all]
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3955_origBNL3955_origGossypium hirsutumsequence_feature


Image
File NameLegend
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A122.3BNL3955View
2Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A193.25BNL3955View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch06_At.06N/A64.36BNL3955View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch06_At.06N/A23.4BNL3955View
5AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A93BNL3955View
6AD-genome wide Reference Map (2009)AD_ch05_At.05N/A257BNL3955View
7AD-genome wide Reference Map (2009)AD_ch06_At.06N/A61BNL3955View
8TM-1 x 3-79, RIL (2012)AD_ch17_Dt.03N/A69.83BNL3955View
9Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A12BNL3955View
103-79 x NM24016, RIL (2008)AD_ch06_At.06N/A5.6BNL3955View
11JLZM x ZJXSLS, F2 (2008)A_JZ_A12N/A223.6BNL3955View
12AD-genome wide Reference Map (2009)AD_ch22_Dt.04N/A71BNL3955View
13TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A54.6BNL3955View
14CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch17_Dt.03N/A77.9BNL3955View
15Monsanto SSR Bin Map, (2009)AD_ch17_Dt.03N/A61BNL3955View
16Deltapine x Giza-83, F2 (2008)AD_chUN/A493.1MAS-L18-190View
17Deltapine x Giza-83, F2 (2008)AD_chUN/A494.6MAS-L18-200View
18Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch06_At.06N/A143.6BNL3955aView
19Palmeri x K-101, F2 (2007)AD_ch17_Dt.03N/A53.5BNL3955aView
20Handan-208 x Pima-90, F2:3 (2007)AD_ch17_Dt.03N/A215.6BNL3955bView
21Palmeri x K-101, F2 (2007)AD_ch22_Dt.04N/A25BNL3955bView
22TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A89.7BNL3955-175View
23TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A11.69BNL3955-175View
24Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch17_Dt.03N/A34.6BNL3955-175View
25TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A50.6BNL3955-175View
26TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A54.63BNL3955View
Sequence
>BNL3955 ID=BNL3955; Name=BNL3955; organism=Gossypium hirsutum; type=genetic_marker; length=169bp
AGAGATGCAATGGGATCGACTACTCCATCTGCATCGGAGTACCCAATTGT
CTTGCAACCTCCTCGTTAGTGTGGTTCATTCATTTTTACTACTAACCTAG
TTTTTTTTTCACAACCATCACAACACACACACACACACACACACACACTC
ATTCCCCGCATTATCACAT