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Marker Overview
Name | BNL0390 |
Alias | BNL390
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Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL0390_orig
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Source Type | genomic |
Repeat Motif | (AG)11, (CT)11, (AG)11+T+(GA)5 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL0390_F: CTTTGGGTTGGAATGTGAGG |
Primer 2 | BNL0390_R: CATTCTGGCCCACACTCAC |
Polymorphism | P_ BNL0390 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
File Name | Legend |
48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch19_Dt.05 | N/A | 102.27 | BNL390 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch19_Dt.05 | N/A | 117.2 | BNL390 | View |
3 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch19_Dt.05 | N/A | 34.3 | BNL390 | View |
4 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch19_Dt.05 | N/A | 224.6 | BNL390 | View |
5 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch19_Dt.05 | N/A | 398.2 | BNL390 | View |
6 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch19_Dt.05 | N/A | 76.6 | BNL390 | View |
7 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch19_Dt.05 | N/A | 100.5 | BNL390 | View |
8 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch19_Dt.05 | N/A | 100.54 | BNL0390 | View |
9 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 193 | BNL0390 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 171 | BNL0390 | View |
11 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch19_Dt.05 | N/A | 50.8 | BNL0390 | View |
12 | Monsanto SSR Bin Map, (2009) | AD_ch19_Dt.05 | N/A | 141 | BNL0390 | View |
13 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch05_At.05 | N/A | 232.1 | BNL390c* | View |
14 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch05_At.05 | N/A | 243.2 | BNL390a | View |
15 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch19_Dt.05 | N/A | 265 | BNL390d* | View |
16 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch25_Dt.06 | N/A | 49.3 | BNL390b* | View |
17 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch19_Dt.05 | N/A | 134.6 | BNL390-275 | View |
18 | TM-1 x Hai-7124, BC1 (2007) | AD_ch19_Dt.05 | N/A | 105.9 | BNL390-275 | View |
19 | TM-1 x Hai-7124, BC1 (2008) | AD_ch19_Dt.05 | N/A | 105.66 | BNL390-275 | View |
20 | TM-1 x Hai-7124, BC1 (2012) | AD_ch19_Dt.05 | N/A | 83.8 | BNL390-275 | View |
21 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch19_Dt.05 | N/A | 92.39 | BNL0390 | View |
22 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch19_Dt.05 | N/A | 150.1 | BNL390 | View |
Sequence
>BNL0390 ID=BNL0390; Name=BNL0390; organism=Gossypium hirsutum; type=genetic_marker; length=236bp CTTTGGGTTGGAATGTGAGGGTGATTGGGGTCAAGTGAACTGAGAGAAAG GATTTAAAGTAGAGAACAAAAAGTGGGGAAACTTGTAGACTAAGAATTGA TGTTTAGATTTGGTAATACACCAAAAACAAATGCTGCTTTGACACTTGTC ATAATCTCACCGCACTGTAAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGA GAATCACTGACAACCACGTGAGTGTGGGCCAGAATG
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