|
|
Marker Overview
| Name | BNL1162 |
|---|
| Genbank ID | N/A |
|---|
| Type | SSR |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | Deltapine 90 |
|---|
| Source Sequence | BNL1162_orig
|
|---|
| Source Type | genomic |
|---|
| Repeat Motif | (GA)14 |
|---|
| PCR Condition | Annealing temperature: 55 |
|---|
| Primer 1 | BNL1162_F: GCGCAAGCGTAGGAGTTTAC |
|---|
| Primer 2 | BNL1162_R: TTGAACGATGAAAGGGAAGG |
|---|
| Polymorphism | P_ BNL1162 |
|---|
| Comment | Primer data obtained in 2000 |
|---|
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch09_At.09 | N/A | 148.8 | BNL1162 | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch09_At.09 | N/A | 39.37 | BNL1162 | View |
| 3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch09_At.09 | N/A | 31.6 | BNL1162 | View |
| 4 | Palmeri x K-101, F2 (2007) | AD_ch09_At.09 | N/A | 30.4 | BNL1162 | View |
| 5 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 68 | BNL1162 | View |
| 6 | TM-1 x 3-79, RIL (2006) | AD_ch09_At.09 | N/A | 12.8 | BNL1162 | View |
| 7 | TM-1 x 3-79, RIL (2012) | AD_ch09_At.09 | N/A | 122.36 | BNL1162 | View |
| 8 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch09_At.09 | N/A | 6.9 | BNL1162 | View |
| 9 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch09_At.09 | N/A | 83.4 | BNL1162 | View |
| 10 | TM-1 x 3-79, RIL (2014) | AD_ch09_At.09 | N/A | 18.9 | BNL1162 | View |
| 11 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch09_At.09 | N/A | 39.7 | BNL1162 | View |
| 12 | SG 747 x Giza 75, BIL (2013) | AD_ch09_At.09 | N/A | 0 | BNL1162 | View |
| 13 | Monsanto SSR Bin Map, (2009) | AD_ch09_At.09 | N/A | 121 | BNL1162 | View |
| 14 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch09_At.09 | N/A | 14.7 | BNL1162a | View |
| 15 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch09_At.09 | N/A | 154 | BNL1162c* | View |
| 16 | TM-1 x Hai-7124, BC1 (2007) | AD_ch09_At.09 | N/A | 32.6 | BNL1162-230 | View |
| 17 | TM-1 x Hai-7124, BC1 (2008) | AD_ch09_At.09 | N/A | 32.47 | BNL1162-230 | View |
| 18 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch09_At.09 | N/A | 0 | BNL1162-230 | View |
| 19 | TM-1 x Hai-7124, BC1 (2005.v0) | AD_ch09_At.09 | N/A | 33.8 | BNL1162-230 | View |
| 20 | TM-1 x Hai-7124, BC1 (2012) | AD_ch09_At.09 | N/A | 33 | BNL1162-230 | View |
| 21 | TM-1 x 3-79, RIL (2012.v3) | AD_ch09_At.09 | N/A | 18.88 | BNL1162 | View |
Sequence
>BNL1162 ID=BNL1162; Name=BNL1162; organism=Gossypium hirsutum; type=genetic_marker; length=243bp
GCGCAAGCGTAGGAGTTTACTTTTGTTTGTTTGAATGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGTTTTTGTCAAACAAAAATTCTGTGGAGGTTATCAA
AAGTAGGGTAGTGAAGAGAGTTAAGGGATTGTGGGATATCTGATTAGTTT
TTGNTTTTCCTCTCCCTTCTAGAAAAAAGTTAACGTCTTTTTTTTCTTTA
CATTTCTTTTCCCCTCTTTTCCTCCTTCCCTTTCATCGTTCAA
|
