CIR0246, CIR0246 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0246
AliasCIR246
Genbank IDAJ567191
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567191
Source Typegenomic
Repeat Motif(TG)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR246_F: TTAGGGTTTAGTTGAATGG
Primer 2CIR246_R: ATGAACACACGCACG
Product Length148
PolymorphismP_ CIR0246
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567191
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567191AJ567191Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch14_Dt.02N/A25.6C1R246View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch14_Dt.02N/A0CIR246View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A0CIR246View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch14_Dt.02N/A0CIR246View
5TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A119.19CIR246View
6Zhongmiansuo-12 x 8891, RIL (2007)AD_ch14_Dt.02N/A0CIR246View
7Yumian-1 x T586, RIL (2006)AD_ch14_Dt.02N/A0CIR246View
8(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch14_Dt.02N/A98.3CIR246View
9DH962 x Jinmian-6, F2 (2009)AD_ch14_Dt.02N/A35.7CIR246View
10DH962 x Jinmian-6, F2 (2009)AD_ch14_Dt.02N/A35.7CIR246View
11Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A0CIR246View
12DH962 X Ji Mian 5, F2 (2015)AD_ch14_Dt.02N/A29.25CIR246View
13TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A7.2CIR246View
14TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch14_Dt.02N/A23.9CIR246View
15W10 x TM-1, F2:3 (2015)AD_ch14_Dt.02N/A9.6CIR246View
16DH962 x Ji Mian 5, RIL (2015)AD_ch14_Dt.02N/A3.7CIR246View
17CCRI-35 x Yumian-1, RIL (2015)AD_ch14_Dt.02N/A79.5CIR246View
18901-001 x sGK156, F2 (2019)AD_ch02_At.02N/A15.74CIR246View
19Handan-208 x Pima-90, F2:3 (2007)AD_ch14_Dt.02N/A0CIR246b*View
20Handan-208 x Pima-90, F2:3 (2007)AD_ch14_Dt.02N/A260.6CIR246aView
21HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch14_Dt.02N/A3CIR246-145View
22AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A13cir0246View
23TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A112.57CIR246-220View
24TM-1 x Hai-7124, BC1 (2007)AD_ch14_Dt.02N/A112.1CIR246-220View
25TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A0CIR246-220View
26Yumian-1 x T586, RIL (2009)AD_ch14_Dt.02N/A15.1CIR246/180t(C14)View
27CCRI-35 x Yumian-1, RIL (2017)AD_ch14_Dt.02N/A0.28CIR246View
28TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A7.23CIR246View
Sequence
>CIR0246 ID=CIR0246; Name=CIR0246; organism=Gossypium hirsutum; type=genetic_marker; length=148bp
TTAGGGTTTAGTTGAATGGGGTTAAAGAACCAAATTAGTAATCCAACCAA
TCAAACCATTAATTCCCTATTTAACCCGGTTGAAAATCTTAAAAAAAGTC
TAAAAATTTTGTGTGTGTGTGTATGCGTGCGTGCGTGCGTGTGTTCAT