CIR0411, CIR0411 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0411
AliasCIR411
Genbank IDAJ567335
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567335
Source Typegenomic
Repeat Motif(AC)9
PCR ConditionAnnealing temperature: 46
Primer 1CIR411_F: AGGTGAAGTGTAGAAGTAG
Primer 2CIR411_R: AGTTATCTATGTGTGTGTG
Product Length184
PolymorphismP_ CIR0411
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567335
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567335AJ567335Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch15_Dt.01N/A92.4CIR411View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch15_Dt.01N/A56.11CIR411View
3Handan-208 x Pima-90, F2:3 (2007)AD_ch15_Dt.01N/A51.4CIR411aView
4Handan-208 x Pima-90, F2:3 (2007)AD_ch15_Dt.01N/A172.2CIR411bView
5AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A91cir0411View
Sequence
>CIR0411 ID=CIR0411; Name=CIR0411; organism=Gossypium hirsutum; type=genetic_marker; length=184bp
AGGTGAAGTGTAGAAGTAGAGTACCAAGTTATGGCTCTACTCACTTGTGA
ACTTATCAAGTTGATACAAGTTCTTCAGGAATTAAGATGTAAGATGGACA
ACGTAATATGATAATCAAGCAACACTACTACAAATTCGGTGTTTCATGAA
AGGAAAACACACACACACACACACATAGATAACT