|
|
Marker Overview
| Name | BNL1350 |
|---|
| Genbank ID | N/A |
|---|
| Type | SSR |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | Deltapine 90 |
|---|
| Source Sequence | BNL1350_orig
|
|---|
| Source Type | genomic |
|---|
| Repeat Motif | (CA)8(GA)16 |
|---|
| PCR Condition | Annealing temperature: 55 |
|---|
| Primer 1 | BNL1350_F: TAGGAGGAGAAGTTGGCGAA |
|---|
| Primer 2 | BNL1350_R: CAAGATGTGACCTTACCGCC |
|---|
| Polymorphism | P_ BNL1350 |
|---|
| Comment | Primer data obtained in 2000 |
|---|
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | 3-79 x NM24016, RIL (2008) | AD_ch01_At.01 | N/A | 19 | BNL1350 | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch15_Dt.01 | N/A | 96.6 | BNL1350 | View |
| 3 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch15_Dt.01 | N/A | 62.8 | BNL1350 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch01_At.01 | N/A | 66.88 | BNL1350 | View |
| 5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch15_Dt.01 | N/A | 70.44 | BNL1350 | View |
| 6 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch01_At.01 | N/A | 62.52 | BNL1350 | View |
| 7 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch15_Dt.01 | N/A | 42.84 | BNL1350 | View |
| 8 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch15_Dt.01 | N/A | 10.6 | BNL1350 | View |
| 9 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 99 | BNL1350 | View |
| 10 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch15_Dt.01 | N/A | 24.9 | BNL1350 | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 162 | BNL1350 | View |
| 12 | Yumian-1 x 7235, RIL (2015) | AD_ch08_At.08 | N/A | 78.1 | BNL1350 | View |
| 13 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch15_Dt.01 | N/A | 90.6 | BNL1350 | View |
| 14 | Emian-22 x 3-79, BC1 (2011) | AD_ch01_At.01 | N/A | 26.95 | BNL1350a | View |
| 15 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch01_At.01 | N/A | 154.1 | BNL1350a | View |
| 16 | TM-1 x 3-79, RIL (2006) | AD_ch01_At.01 | N/A | 26.3 | BNL1350a | View |
| 17 | TM-1 x 3-79, RIL (2012) | AD_ch01_At.01 | N/A | 57.33 | BNL1350a | View |
| 18 | TM-1 x 3-79, RIL (2014) | AD_ch01_At.01 | N/A | 87 | BNL1350a | View |
| 19 | Monsanto SSR Bin Map, (2009) | AD_ch01_At.01 | N/A | 81 | BNL1350a | View |
| 20 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch15_Dt.01 | N/A | 103.3 | BNL1350b | View |
| 21 | TM-1 x 3-79, RIL (2006) | AD_ch15_Dt.01 | N/A | 13.4 | BNL1350b | View |
| 22 | TM-1 x 3-79, RIL (2012) | AD_ch15_Dt.01 | N/A | 58.61 | BNL1350b | View |
| 23 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 101.19 | BNL1350b | View |
| 24 | TM-1 x 3-79, RIL (2014) | AD_ch15_Dt.01 | N/A | 61.3 | BNL1350b | View |
| 25 | Monsanto SSR Bin Map, (2009) | AD_ch15_Dt.01 | N/A | 61 | BNL1350b | View |
| 26 | TM-1 x 3-79, RIL (2012.v3) | AD_ch01_At.01 | N/A | 87.04 | BNL1350a | View |
| 27 | TM-1 x 3-79, RIL (2012.v3) | AD_ch15_Dt.01 | N/A | 61.29 | BNL1350b | View |
| 28 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch15_Dt.01 | N/A | 137.9 | BNL1350 | View |
Sequence
>BNL1350 ID=BNL1350; Name=BNL1350; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
TAGGAGGAGAAGTTGGCGAAGGCAAAAGGCGATTCACACTTAAAAGGCAG
AAAGTCGTTGTAAGAGGTAGAGAGGGATGAGGATGAAGGAAGAGAGGGAG
AGACTGTTTGCACACACACACACACAGAGGGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGTATAAATATCTTGTAGGCGGTAAGGTCACATCTTG
|
