BNL1408, BNL1408 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1408
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1408_orig
Source Typegenomic
Repeat Motif(AG)17
PCR ConditionAnnealing temperature: 55
Primer 1BNL1408_F: AAGGGAGAGAAACGGAGAGC
Primer 2BNL1408_R: CATTTCACCTCTCCCACCAC
PolymorphismP_ BNL1408
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL1408_FBNL1408_FGossypium hirsutumprimer
BNL1408_RBNL1408_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber elongationqFEL.PA-F2_ch11.pop32-jointGossypium hirsutum x mustelinumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1408BNL1408Gossypium hirsutummarker_locus
BNL1408aBNL1408aGossypium hirsutummarker_locus
BNL1408-200BNL1408-200Gossypium hirsutummarker_locus
BNL1408-430BNL1408-430Gossypium hirsutummarker_locus
BNL1408-195BNL1408-195Gossypium hirsutummarker_locus
BNL1408-400BNL1408-400Gossypium hirsutummarker_locus
BNL1408-215BNL1408-215Gossypium hirsutummarker_locus
BNL1408/200y(C11)BNL1408/200y(C11)Gossypium hirsutummarker_locus
BNL1408(C5,C18,D03)BNL1408(C5,C18,D03)Gossypium hirsutummarker_locus
BNL1408_207/197BNL1408_207/197Gossypium hirsutummarker_locus
BNL1408bBNL1408bGossypium hirsutummarker_locus
BNL1408BNL1408-114.082Gossypium hirsutummarker_locus
BNL1408BNL1408-87.5Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1408_origBNL1408_origGossypium hirsutumsequence_feature


Sequence
>BNL1408 ID=BNL1408|Name=BNL1408|organism=Gossypium hirsutum|type=genetic_marker|length=199bp
AAGGGAGAGAAACGGAGAGCGGATTTATAGCGTGAAAGTGAAGAATTTAA
ATAGAATATAAAATTCTAGAATAAAAATATAATATAATAAAAATAAAGAA
AACAAAGCGGATAGTCCCAGAAATTGCCTGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGTTGTTTGNNGTTTGGGTGGTGGGAGAGGTGAAATG
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr11/lgA03N/AAD_chr.1186.7BNL1408
2Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c11N/AAD_chr.1173.64BNL1408
3Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr11/lgA03N/AAD_chr.11236.2BNL1408
4Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr11N/AAD_chr.11110BNL1408
5AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr11N/AAD_chr.11114BNL1408
6TM-1 x 3-79, RIL (2006)TM-1 x 3-79, RIL (2006).T3-RIL_chr.11bN/AAD_chr.1162.6BNL1408
7TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c11N/AAD_chr.11111.2BNL1408
8Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg8/chr11N/AAD_chr.11100.7BNL1408
9Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_chr05.1N/AAD_chr.0543.6BNL1408
10Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr11N/AAD_chr.1184.1BNL1408
11AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr21N/AAD_chr.21153BNL1408
12Yumian-1 x T586, F2:7 (2008)Yumian-1 x T586, RIL (2008).YT-RIL_chr21N/AAD_chr.2147.7BNL1408
13Yumian-1 x T586, RIL (2006)YT-RIL_chr21-3N/AAD_chr.2122.5BNL1408
14NemX x SJ-2, RIL (2005)NS-RIL_chr11/lgA03N/AAD_chr.11208.6BNL1408
15Yumian-1 x T586, RIL (2015)YT-RIL.15_chr21N/AAD_chr.21136BNL1408
16TM-1 x 3-79, RIL (2014)T3-RIL.14_chr11N/AAD_chr.11114.1BNL1408
17TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr21N/AAD_chr.21122.8BNL1408
18Emian-22 x 3-79, BC1 (2015)E3-BC1-2015_chr11N/AAD_chr.11150BNL1408
19CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr11N/AAt.11186.4BNL1408
20Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr11N/AAD_chr.11110BNL1408a
21SG 747 x Giza 75, BIL (2013)SG-BIL_chr11N/AAD_chr.119.3BNL1408a
22TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr11N/AAD_chr.1170.1BNL1408-200
23TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr11/A11N/AAD_chr.1170.23BNL1408-200
24Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgA03.1N/AAD_chr.1167.6BNL1408-200
25TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr21N/AAD_chr.2175BNL1408-430
26TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr21/D11N/AAD_chr.2167.16BNL1408-430
27Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgA03.1N/AAD_chr.1166.2BNL1408-195
28Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgD02N/AAD_chr.2197BNL1408-400
29Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgD02N/AAD_chr.21134.5BNL1408-215
30Yumian-1 x T586, RIL (2009)YT-RIL_chr21N/AAD_chr.2151.1BNL1408/200y(C11)
31Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr05-1N/AAD_chr.0543.6BNL1408(C5,C18,D03)
32TM-1 x 3-79, RIL (2011)T3-RIL.11_chr11N/AAD_chr.1129.4BNL1408_207/197
33SG 747 x Giza 75, BIL (2013)SG-BIL_chr21N/AAD_chr.2111.1BNL1408b
34TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.11N/AAD_chr.11114.08BNL1408
35PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr11N/AAt.1187.5BNL1408