MGHES0073, MGHES0073 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMGHES0073
AliasMGHES73
MGHES-73
MGHES-073
Genbank IDAI728199
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceAI728199.1
Source TypeEST
Repeat Motif(ATTC)5; (TCC)3
PCR ConditionAnnealing temperature: 55
Primer 1MGHES73_F: CCCGATATCCTTAGCCTTTT
Primer 2MGHES73_R: AGTCGGAGGTGATGGTTAGG
Product Length210
Publication[view all]
CommentPrimer data obtained in 2005
Germplasm
Stock NameType
Acala Maxxacultivar
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAI728199
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
MGHES73_FMGHES73_FGossypium hirsutumprimer
MGHES73_RMGHES73_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
MGHES73MGHES73Gossypium hirsutummarker_locus
MGHES73-208MGHES73-208Gossypium hirsutummarker_locus
MGHES73bMGHES73bGossypium hirsutummarker_locus
MGHES73aMGHES73aGossypium hirsutummarker_locus
mghes0073mghes0073Gossypium hirsutummarker_locus
MGHES73/205t(C9)MGHES73/205t(C9)Gossypium hirsutummarker_locus
MGHES-73MGHES-73Gossypium hirsutummarker_locus
MGHES73MGHES73-94.156Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AI728199.1AI728199.1Gossypium hirsutumsequence_feature


Publications
YearPublication
2004EST-SSR: A new class of genetic markers in cotton.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:44845610..44845828 +
A09chromosomeA09:73235088..73235302 +
CM018223.1chromosomeCM018223.1:42527901..42528119 +
CM018210.1chromosomeCM018210.1:68590631..68590841 +
D5_09chromosomeD5_09:36125766..36125984 +
KI_09chromosomeKI_09:32416133..32416352 +
Chr11chromosomeChr11:21321122..21321332 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:75822583..75822793 +
Chr6chromosomeChr6:7582225..7582443 -
D10_09chromosomeD10_09:7477072..7477290 -
CM016622.1chromosomeCM016622.1:11490901..11491115 -
At_chr6chromosomeAt_chr6:55496695..55496909 +
Dt_chr6chromosomeDt_chr6:7797387..7797604 -
scaffold114973supercontigscaffold114973:51..269 +
D09chromosomeD09:42576718..42576936 +
A09chromosomeA09:68145349..68145563 +
Ghir_D09chromosomeGhir_D09:44640094..44640312 +
Ghir_A09chromosomeGhir_A09:72905477..72905691 +
D09chromosomeD09:44128430..44128648 +
A09chromosomeA09:74503700..74503914 +
D09chromosomeD09:44409044..44409262 +
A09chromosomeA09:74675274..74675488 +
D09chromosomeD09:42478240..42478458 +
A09chromosomeA09:71308954..71309184 +
At09chromosomeAt09:70718984..70719194 +
At09chromosomeAt09:70725329..70725544 +
scaffold26829supercontigscaffold26829:88510..88728 +
scaffold18723supercontigscaffold18723:2100..2310 +
scaffold18723supercontigscaffold18723:8445..8660 +
Gbar_D09chromosomeGbar_D09:43229679..43229897 +
Gbar_A09chromosomeGbar_A09:69093114..69093324 +
D09chromosomeD09:45695074..45695292 +
A09chromosomeA09:70565865..70566075 +
CM017631.1chromosomeCM017631.1:43434074..43434292 +
CM017618.1chromosomeCM017618.1:70489663..70489873 +
CM017657.1chromosomeCM017657.1:44824920..44825138 +
CM017644.1chromosomeCM017644.1:73399359..73399569 +
CM017709.1chromosomeCM017709.1:44064029..44064247 +
CM017696.1chromosomeCM017696.1:70592217..70592427 +
Sequence
>MGHES0073 ID=MGHES0073|Name=MGHES0073|organism=Gossypium hirsutum|type=genetic_marker|length=215bp
CCCGATATCCTTAGCCTTTTAAATTCATTCATTCATTCATTCACTTCCTC
TAGTTTCGTTTCCGTCCAACGTAACTACCACGCCGACCGTCGTAACCACC
GCCGTAAATTCTCCCAAAATGGCGAAACTACCCTTACAGATCCTCCTCCT
CTTCCTCCTTTCCCTCATTTCCTCCTCCACCGCAGAGATCAAAACCCTAA
CCATCACCTCCGACT
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr09N/AAD_chr.0964.6MGHES73
2Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr09N/AAD_chr.09118.33MGHES73
3Yumian-1 x T586, RIL (2006)YT-RIL_chr09-1N/AAD_chr.095.6MGHES73
4Yumian-1 x T586, RIL (2015)YT-RIL.15_chr09N/AAD_chr.0976.5MGHES73
5CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr09N/AAt.09118.1MGHES73
6CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr09N/AAD_chr.0964.1MGHES73
7CCRI-36 x G2005, RIL (2016)CG-RIL_chr09N/AAD_chr.0941.01MGHES73
8901-001 x sGK156, F2 (2019)Chr09N/AAD_chr.0917.61MGHES73
9Deltapine-61 x Texas-701, F2 (2007)Deltapine-61 x Texas-701, F2 (2007).DT-F2_chr.09N/AAD_chr.093.4MGHES73-208
10Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr09N/AAD_chr.0985.1MGHES73b
11Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr09N/AAD_chr.0991.4MGHES73a
12AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr09N/AAD_chr.09146mghes0073
13Yumian-1 x T586, RIL (2009)YT-RIL_chr09-2N/AAD_chr.095.6MGHES73/205t(C9)
14W10 x TM-1, F2:3 (2015)WT-F2:3_chr09-1N/AAD_chr.0937MGHES-73
15CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr09N/AAt.0994.16MGHES73