MGHES0073, MGHES0073 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMGHES0073
AliasMGHES73
MGHES-73
MGHES-073
Genbank IDAI728199
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceAI728199.1
Source TypeEST
Repeat Motif(ATTC)5; (TCC)3
PCR ConditionAnnealing temperature: 55
Primer 1MGHES73_F: CCCGATATCCTTAGCCTTTT
Primer 2MGHES73_R: AGTCGGAGGTGATGGTTAGG
Product Length210
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAI728199
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:44845610..44845828 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:73235088..73235302 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:42527901..42528119 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:68590631..68590841 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:36125766..36125984 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:32416133..32416352 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:75822583..75822793 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:7477072..7477290 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:11490901..11491115 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr6chromosomeAt_chr6:55496695..55496909 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:7797387..7797604 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold114973supercontigscaffold114973:51..269 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:42576718..42576936 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:68145349..68145563 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:44640094..44640312 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:72905477..72905691 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:44128430..44128648 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:74503700..74503914 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:44409044..44409262 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:74675274..74675488 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:42478240..42478458 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:71308954..71309184 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:70718984..70719194 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At09chromosomeAt09:70725329..70725544 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold26829supercontigscaffold26829:88510..88728 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18723supercontigscaffold18723:2100..2310 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18723supercontigscaffold18723:8445..8660 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:43229679..43229897 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:69093114..69093324 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:45695074..45695292 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:70565865..70566075 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:43434074..43434292 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:70489663..70489873 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:44824920..44825138 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:73399359..73399569 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:44064029..44064247 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:70592217..70592427 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:46106287..46106505 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:76142687..76142901 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:75216349..75216571 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:78115782..78115992 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:42339005..42339223 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:61877574..61877793 +Gossypium anomalum (B1) genome NSF_v1n/a
chr06chromosomechr06:35373579..35373859 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:29626361..29626579 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:44184863..44185081 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:32675825..32676043 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:24579853..24580064 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:30173047..30173265 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:10313650..10313868 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:62877499..62877718 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:121368130..121368349 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Publications
YearPublication
2004EST-SSR: A new class of genetic markers in cotton.
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AI728199.1AI728199.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch09_At.09N/A64.6MGHES73View
2Emian-22 x 3-79, BC1 (2011)AD_ch09_At.09N/A118.33MGHES73View
3Yumian-1 x T586, RIL (2006)AD_ch09_At.09N/A5.6MGHES73View
4Yumian-1 x T586, RIL (2015)AD_ch09_At.09N/A76.5MGHES73View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A118.1MGHES73View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch09_At.09N/A64.1MGHES73View
7CCRI-36 x G2005, RIL (2016)AD_ch09_At.09N/A41.01MGHES73View
8901-001 x sGK156, F2 (2019)AD_ch09_At.09N/A17.61MGHES73View
9Deltapine-61 x Texas-701, F2 (2007)AD_ch09_At.09N/A3.4MGHES73-208View
10Handan-208 x Pima-90, F2:3 (2007)AD_ch09_At.09N/A85.1MGHES73bView
11Handan-208 x Pima-90, F2:3 (2007)AD_ch09_At.09N/A91.4MGHES73aView
12AD-genome wide Reference Map (2009)AD_ch09_At.09N/A146mghes0073View
13Yumian-1 x T586, RIL (2009)AD_ch09_At.09N/A5.6MGHES73/205t(C9)View
14W10 x TM-1, F2:3 (2015)AD_ch09_At.09N/A37MGHES-73View
15CCRI-35 x Yumian-1, RIL (2017)AD_ch09_At.09N/A94.16MGHES73View
Sequence
>MGHES0073 ID=MGHES0073; Name=MGHES0073; organism=Gossypium hirsutum; type=genetic_marker; length=215bp
CCCGATATCCTTAGCCTTTTAAATTCATTCATTCATTCATTCACTTCCTC
TAGTTTCGTTTCCGTCCAACGTAACTACCACGCCGACCGTCGTAACCACC
GCCGTAAATTCTCCCAAAATGGCGAAACTACCCTTACAGATCCTCCTCCT
CTTCCTCCTTTCCCTCATTTCCTCCTCCACCGCAGAGATCAAAACCCTAA
CCATCACCTCCGACT